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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,682



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 99.5
P(reg)
= 0.0017
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info OPT3 [AT4G16370] Arabidopsis thaliana 290 S/G2 0.033 1.51E-4
Periodic
Click to View Chart Preview Click for Info SPAC29B12.10c Schizosaccharomyces pombe 368 G2 2.65E-10 1.51E-8
Periodic
Click to View Chart Preview Click for Info isp4 [SPBC29B5.02c] Schizosaccharomyces pombe 1,568 uncertain 55.889 8.75E-15
Click to View Chart Preview Click for Info OPT4 [AT5G64410] Arabidopsis thaliana 3,151 uncertain 0.635 0.005
Click to View Chart Preview Click for Info SPCC965.02 [SPCC965.02z] Schizosaccharomyces pombe 4,122 uncertain 4531.302 5E-6
Click to View Chart Preview Click for Info OPT1 [YJL212C] Saccharomyces cerevisiae 4,553 uncertain 5.37 0.372
Click to View Chart Preview Click for Info OPT6 [AT4G27730] Arabidopsis thaliana 8,267 uncertain 3.043 0.005
Click to View Chart Preview Click for Info OPT7 [AT4G10770] Arabidopsis thaliana 8,902 uncertain 2.217 0.051
Click to View Chart Preview Click for Info OPT2 [AT1G09930] Arabidopsis thaliana 8,947 uncertain 1.229 0.176
Click to View Chart Preview Click for Info OPT5 [AT4G26590] Arabidopsis thaliana 10,118 uncertain 0.257 1.813
Click to View Chart Preview Click for Info OPT9 [AT5G53510] Arabidopsis thaliana 15,258 uncertain 1.093 1.509
Click to View Chart Preview Click for Info OPT8 [AT5G53520] Arabidopsis thaliana 15,386 uncertain 1.663 0.94

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of OPT2 (from probeset YPR194C).

Click to enlarge