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Saccharomyces cerevisiae

Cyclebase periodic rank: 106

Periodic


Gene Features:

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Degradation Signals:
  1. Dbox
  2. KENbox
  3. PEST
Overexpression Phenotype:
  1. Cell Cycle Arrest
  2. G2 Arrest

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.863E-13
P(reg)
= 3.876E-11
Peaktime
= G2 (66%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info CLN2 [YPL256C] Saccharomyces cerevisiae 8 G1 2.04E-24 3.8E-12
Periodic
Click to View Chart Preview Click for Info CYCB1-4 [AT2G26760] Arabidopsis thaliana 15 G1 0.001 2.05E-5
Periodic
Click to View Chart Preview Click for Info cig2 [SPAPB2B4.03] Schizosaccharomyces pombe 38 M/G1 2.9E-43 1.4E-18
Periodic
Click to View Chart Preview Click for Info CYCB1-3 [AT3G11520] Arabidopsis thaliana 40 G1 0.001 1.74E-4
Periodic
Click to View Chart Preview Click for Info CLN1 [YMR199W] Saccharomyces cerevisiae 45 G1/S 1.26E-18 1.62E-11
Periodic
Click to View Chart Preview Click for Info CCNB1 [ENSG00000134057] Homo sapiens 49 M 1.25E-15 6.06E-6
Periodic
Click to View Chart Preview Click for Info CLB6 [YGR109C] Saccharomyces cerevisiae 69 G1 4.02E-17 3.44E-10
Periodic
Click to View Chart Preview Click for Info CLB1 [YGR108W] Saccharomyces cerevisiae 78 G2 6.68E-16 2.06E-10
Periodic
Click to View Chart Preview Click for Info AT1g34460 Arabidopsis thaliana 95 G1 0.01 5.96E-5
Periodic
Click to View Chart Preview Click for Info CCNB2 [ENSG00000157456] Homo sapiens 97 M 9E-12 4.61E-5
Periodic
Click to View Chart Preview Click for Info CYCB2-4 [AT1G76310] Arabidopsis thaliana 135 M/G1 0.002 0.021
Periodic
Click to View Chart Preview Click for Info CLN3 [YAL040C] Saccharomyces cerevisiae 158 M 6.03E-14 4.36E-8
Periodic
Click to View Chart Preview Click for Info cdc13 [SPBC582.03] Schizosaccharomyces pombe 164 M 1.4E-32 0.132
Periodic
Click to View Chart Preview Click for Info cig1 [SPCC4E9.02z] Schizosaccharomyces pombe 165 G2 2.91E-23 2.02E-6
Periodic
Click to View Chart Preview Click for Info CYCB2-2 [AT4G35620] Arabidopsis thaliana 167 G1 0.005 0.011
Periodic
Click to View Chart Preview Click for Info CLB5 [YPR120C] Saccharomyces cerevisiae 323 G1 4.84E-11 2.01E-5
Periodic
Click to View Chart Preview Click for Info CYCB2-1 [AT2G17620] Arabidopsis thaliana 331 M/G1 9.26E-4 0.364
Periodic
Click to View Chart Preview Click for Info CLB4 [YLR210W] Saccharomyces cerevisiae 361 S 1.45E-15 0.025
Periodic
Click to View Chart Preview Click for Info CYCB3-1 [AT1G16330] Arabidopsis thaliana 382 M/G1 0.012 0.075
Periodic
Click to View Chart Preview Click for Info CLB3 [YDL155W] Saccharomyces cerevisiae 455 S 1.79E-14 0.08
Periodic
Click to View Chart Preview Click for Info CCNG2 [ENSG00000138764] Homo sapiens 645 uncertain 0.002 6.88E-4
Click to View Chart Preview Click for Info SDS [AT1G14750] Arabidopsis thaliana 1,721 uncertain 0.155 0.041
Click to View Chart Preview Click for Info CNTD2 [ENSG00000105219] Homo sapiens 1,743 uncertain 0.389 7.35E-4
Click to View Chart Preview Click for Info DRD2 [ENSG00000149295] Homo sapiens 1,744 uncertain 0.389 7.35E-4
Click to View Chart Preview Click for Info puc1 [SPBC19F5.01c] Schizosaccharomyces pombe 3,818 uncertain 57.945 0.02
Click to View Chart Preview Click for Info rem1 [SPBC16E9.17c] Schizosaccharomyces pombe 4,201 uncertain 268.049 0.12
Click to View Chart Preview Click for Info CCNU [ENSG00000152669] Homo sapiens 4,682 uncertain 0.009 1.487
Click to View Chart Preview Click for Info CCNB3 [ENSG00000147082] Homo sapiens 13,361 uncertain 4.179 1.245
Click to View Chart Preview Click for Info CCNG [ENSG00000113328] Homo sapiens 13,502 uncertain 14.783 0.411
Click to View Chart Preview Click for Info CYCB1-1 [AT4G37490] Arabidopsis thaliana 13,859 uncertain 2.604 0.346

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of CLB2 (from probeset YPR119W).

Click to enlarge