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Saccharomyces cerevisiae

Cyclebase periodic rank: 717



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.959E-10
P(reg)
= 0.1325
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info fkh2 [SPBC16G5.15c] Schizosaccharomyces pombe 35 G2/M 3.81E-47 1.04E-15
Periodic
Click to View Chart Preview Click for Info FKH1 [YIL131C] Saccharomyces cerevisiae 85 S/G2 4.77E-19 7.69E-7
Periodic
Click to View Chart Preview Click for Info FOXM1 [ENSG00000111206] Homo sapiens 107 G2 2.21E-13 0.006
Periodic
Click to View Chart Preview Click for Info HCM1 [YCR065W] Saccharomyces cerevisiae 156 G1/S 3.03E-16 6.65E-6
Periodic
Click to View Chart Preview Click for Info FKH2 [YNL068C] Saccharomyces cerevisiae 487 G2 3.95E-7 1.55E-4
Periodic
Click to View Chart Preview Click for Info sep1 [SPBC4C3.12] Schizosaccharomyces pombe 2,302 uncertain 0.004 0.193
Click to View Chart Preview Click for Info fhl1 [SPAC1142.08] Schizosaccharomyces pombe 2,494 uncertain 6.549 1.17E-6
Click to View Chart Preview Click for Info mei4 [SPBC32H8.11] Schizosaccharomyces pombe 2,534 uncertain 3.07 2E-5
Click to View Chart Preview Click for Info ILF [ENSG00000141568] Homo sapiens 3,094 uncertain 0.003 0.877
Click to View Chart Preview Click for Info FOXJ2 [ENSG00000065970] Homo sapiens 3,864 uncertain 0.012 0.553
Click to View Chart Preview Click for Info FOXI1 [ENSG00000168269] Homo sapiens 5,554 uncertain 1.391 0.018
Click to View Chart Preview Click for Info FOXD3 [ENSG00000187140] Homo sapiens 7,985 uncertain 0.142 0.917
Click to View Chart Preview Click for Info COPG [ENSG00000181789] Homo sapiens 8,063 uncertain 0.06 2.261
Click to View Chart Preview Click for Info FOXJ1 [ENSG00000129654] Homo sapiens 8,615 uncertain 1.168 0.164
Click to View Chart Preview Click for Info FOXO3A [ENSG00000118689] Homo sapiens 9,318 uncertain 1.712 0.171
Click to View Chart Preview Click for Info FOXF2 [ENSG00000137273] Homo sapiens 9,961 uncertain 3.654 0.116
Click to View Chart Preview Click for Info RGSL2 [ENSG00000121446] Homo sapiens 10,260 uncertain 1.846 0.273
Click to View Chart Preview Click for Info BF1 [ENSG00000176165] Homo sapiens 10,903 uncertain 1.535 0.505
Click to View Chart Preview Click for Info FOXD4L5 [ENSG00000204779] Homo sapiens 11,521 uncertain 0.872 1.327
Click to View Chart Preview Click for Info FOXN2 [ENSG00000170802] Homo sapiens 11,766 uncertain 0.316 4.294
Click to View Chart Preview Click for Info FOXF1 [ENSG00000103241] Homo sapiens 13,234 uncertain 1.795 2.546
Click to View Chart Preview Click for Info FOXE3 [ENSG00000186790] Homo sapiens 13,355 uncertain 5.059 1.027
Click to View Chart Preview Click for Info FOXN4 [ENSG00000139445] Homo sapiens 13,655 uncertain 3.119 2.378
Click to View Chart Preview Click for Info MLLT7 [ENSG00000184481] Homo sapiens 13,916 uncertain 3.115 3.858
Click to View Chart Preview Click for Info At3g07260 Arabidopsis thaliana 16,567 uncertain 1.669 1.272

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of FHL1 (from probeset YPR104C).

Click to enlarge