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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,143



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.7169
P(reg)
= 0.0546
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info RPL1B [YGL135W] Saccharomyces cerevisiae 4,324 uncertain 17.97 0.057
Click to View Chart Preview Click for Info rpl1a [SPBC30D10.18c] Schizosaccharomyces pombe 4,475 uncertain 939.251 0.808
Click to View Chart Preview Click for Info rpl1b [SPCC1183.08c] Schizosaccharomyces pombe 4,730 uncertain 26181.154 0.047
Click to View Chart Preview Click for Info RPL10A [ENSG00000198755] Homo sapiens 7,224 uncertain 0.015 5.201
Click to View Chart Preview Click for Info RPL10AC [AT5G22440] Arabidopsis thaliana 8,092 uncertain 0.319 0.783
Click to View Chart Preview Click for Info RPL10AA [AT1G08360] Arabidopsis thaliana 8,199 uncertain 0.198 1.434
Click to View Chart Preview Click for Info RPL10AB [AT2G27530] Arabidopsis thaliana 17,344 uncertain 1.57 1.697

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of RPL1A (from probeset YPL220W).

Click to enlarge