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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,264



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.681
P(reg)
= 2.611E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info YPS3 [YLR121C] Saccharomyces cerevisiae 97 G1 1.22E-16 2.03E-8
Periodic
Click to View Chart Preview Click for Info At1g69100 Arabidopsis thaliana 338 G1 0.017 0.016
Periodic
Click to View Chart Preview Click for Info MKC7 [YDR144C] Saccharomyces cerevisiae 447 S 2.59E-9 9.86E-4
Periodic
Click to View Chart Preview Click for Info At1g01300 Arabidopsis thaliana 451 uncertain 0.027 0.012
Click to View Chart Preview Click for Info At3g51330 Arabidopsis thaliana 536 uncertain 0.042 0.004
Click to View Chart Preview Click for Info BAR1 [YIL015W] Saccharomyces cerevisiae 610 uncertain 1.41E-4 8.39E-5
Click to View Chart Preview Click for Info Pra-1 [AT1G11910] Arabidopsis thaliana 667 uncertain 0.001 1.137
Click to View Chart Preview Click for Info YPS1 [YLR120C] Saccharomyces cerevisiae 766 uncertain 0.003 5.93E-5
Click to View Chart Preview Click for Info sxa1 [SPAC26A3.01] Schizosaccharomyces pombe 843 uncertain 3.6E-13 0.111
Click to View Chart Preview Click for Info F22O6_120 [AT3G52500] Arabidopsis thaliana 925 uncertain 0.038 0.131
Click to View Chart Preview Click for Info T7H20_240 [AT5G02190] Arabidopsis thaliana 1,074 uncertain 0.099 0.013
Click to View Chart Preview Click for Info At1g31450 Arabidopsis thaliana 1,109 uncertain 0.084 0.037
Click to View Chart Preview Click for Info F15G16.210 [AT3G61820] Arabidopsis thaliana 1,313 uncertain 0.204 9.26E-4
Click to View Chart Preview Click for Info AT3g51360 Arabidopsis thaliana 1,564 uncertain 0.105 0.082
Click to View Chart Preview Click for Info AT4g04460 Arabidopsis thaliana 1,633 uncertain 0.297 6.79E-4
Click to View Chart Preview Click for Info At5g24820 Arabidopsis thaliana 1,694 uncertain 0.214 0.007
Click to View Chart Preview Click for Info YPS5 [YGL259W] Saccharomyces cerevisiae 1,920 uncertain 0.25 0.002
Click to View Chart Preview Click for Info At3g18490 Arabidopsis thaliana 2,006 uncertain 0.319 0.004
Click to View Chart Preview Click for Info At1g64830 Arabidopsis thaliana 2,043 uncertain 0.44 6.6E-4
Click to View Chart Preview Click for Info At1g09750 Arabidopsis thaliana 2,881 uncertain 0.115 0.34
Click to View Chart Preview Click for Info YPS6 [YIR039C] Saccharomyces cerevisiae 3,309 uncertain 3.072 0.02
Click to View Chart Preview Click for Info AT4g30040 Arabidopsis thaliana 3,503 uncertain 0.721 0.006
Click to View Chart Preview Click for Info At2g39710 Arabidopsis thaliana 3,722 uncertain 0.526 0.049
Click to View Chart Preview Click for Info yps1 [SPCC1795.09] Schizosaccharomyces pombe 3,874 uncertain 20.96 1.155
Click to View Chart Preview Click for Info At1g65240 Arabidopsis thaliana 4,130 uncertain 0.226 0.309
Click to View Chart Preview Click for Info At5g48430 Arabidopsis thaliana 4,613 uncertain 0.065 1.73
Click to View Chart Preview Click for Info YPS7 [YDR349C] Saccharomyces cerevisiae 4,951 uncertain 9.216 0.687
Click to View Chart Preview Click for Info At5g19110 Arabidopsis thaliana 5,435 uncertain 1.176 0.02
Click to View Chart Preview Click for Info CTSD [ENSG00000117984] Homo sapiens 5,683 uncertain 0.031 0.903
Click to View Chart Preview Click for Info At2g42980 Arabidopsis thaliana 5,708 uncertain 2.95 1.31E-4
Click to View Chart Preview Click for Info At1g62290 Arabidopsis thaliana 5,943 uncertain 1.313 0.023
Click to View Chart Preview Click for Info At4g16563 Arabidopsis thaliana 6,019 uncertain 1.173 0.041
Click to View Chart Preview Click for Info At5g07030 Arabidopsis thaliana 6,459 uncertain 2.149 0.003
Click to View Chart Preview Click for Info At1g66180 Arabidopsis thaliana 6,540 uncertain 1.303 0.046
Click to View Chart Preview Click for Info At5g19100 Arabidopsis thaliana 6,551 uncertain 0.093 2.197
Click to View Chart Preview Click for Info T30N20_40 [AT5G10770] Arabidopsis thaliana 6,808 uncertain 2.04 0.007
Click to View Chart Preview Click for Info PGA3 [ENSG00000180860] Homo sapiens 6,885 uncertain 0.424 0.152
Click to View Chart Preview Click for Info PGA4 [ENSG00000204973] Homo sapiens 6,886 uncertain 0.424 0.152
Click to View Chart Preview Click for Info CTSE [ENSG00000196188] Homo sapiens 6,944 uncertain 0.008 8.564
Click to View Chart Preview Click for Info AT4g12920 Arabidopsis thaliana 7,091 uncertain 0.647 0.234
Click to View Chart Preview Click for Info T30N20_30 [AT5G10760] Arabidopsis thaliana 7,277 uncertain 2.718 0.002
Click to View Chart Preview Click for Info At5g37540 Arabidopsis thaliana 7,349 uncertain 1.588 0.045
Click to View Chart Preview Click for Info At3g59080 Arabidopsis thaliana 7,558 uncertain 0.573 0.32
Click to View Chart Preview Click for Info T19K4.10 [AT4G35880] Arabidopsis thaliana 7,649 uncertain 1.854 0.033
Click to View Chart Preview Click for Info T12E18_90 [AT3G54400] Arabidopsis thaliana 8,050 uncertain 2.65 0.009
Click to View Chart Preview Click for Info At2g03200 Arabidopsis thaliana 8,258 uncertain 1.467 0.1
Click to View Chart Preview Click for Info AT5g36260 Arabidopsis thaliana 8,353 uncertain 2.241 0.03
Click to View Chart Preview Click for Info AT4g30030 Arabidopsis thaliana 8,922 uncertain 2.269 0.047
Click to View Chart Preview Click for Info AT3g51350 Arabidopsis thaliana 9,678 uncertain 2.505 0.062
Click to View Chart Preview Click for Info At5g22850 Arabidopsis thaliana 9,901 uncertain 0.851 0.394
Click to View Chart Preview Click for Info At3g12700 Arabidopsis thaliana 9,934 uncertain 1.046 0.305
Click to View Chart Preview Click for Info PGC [ENSG00000096088] Homo sapiens 10,080 uncertain 0.929 0.49
Click to View Chart Preview Click for Info At3g42550 Arabidopsis thaliana 10,393 uncertain 0.932 0.415
Click to View Chart Preview Click for Info At1g25510 Arabidopsis thaliana 10,984 uncertain 3.099 0.084
Click to View Chart Preview Click for Info AT4g22050 Arabidopsis thaliana 11,273 uncertain 1.449 0.314
Click to View Chart Preview Click for Info REN [ENSG00000143839] Homo sapiens 11,488 uncertain 0.439 2.584
Click to View Chart Preview Click for Info At1g08210 Arabidopsis thaliana 11,534 uncertain 0.498 1.269
Click to View Chart Preview Click for Info At5g45120 Arabidopsis thaliana 12,026 uncertain 2.483 0.198
Click to View Chart Preview Click for Info NAPSB [ENSG00000131401] Homo sapiens 12,089 uncertain 0.617 2.674
Click to View Chart Preview Click for Info At2g28030 Arabidopsis thaliana 12,112 uncertain 1.012 0.647
Click to View Chart Preview Click for Info At1g44130 Arabidopsis thaliana 12,482 uncertain 1.189 0.595
Click to View Chart Preview Click for Info At4g16566 Arabidopsis thaliana 13,796 uncertain 0.548 2.272
Click to View Chart Preview Click for Info At2g23945 Arabidopsis thaliana 14,358 uncertain 0.879 1.51
Click to View Chart Preview Click for Info AT5g43100 Arabidopsis thaliana 14,475 uncertain 0.619 2.374
Click to View Chart Preview Click for Info F19K16.30 [AT1G79720] Arabidopsis thaliana 15,848 uncertain 1.192 1.588
Click to View Chart Preview Click for Info At3g20015 Arabidopsis thaliana 16,731 uncertain 1.811 1.197
Click to View Chart Preview Click for Info T20M3.11 [AT1G05840] Arabidopsis thaliana 16,947 uncertain 2.037 1.108
Click to View Chart Preview Click for Info At2g17760 Arabidopsis thaliana 17,780 uncertain 1.768 1.663
Click to View Chart Preview Click for Info At5g33340 Arabidopsis thaliana 18,076 uncertain 2.282 1.318
Click to View Chart Preview Click for Info F17M5.250 [AT4G33490] Arabidopsis thaliana 18,096 uncertain 1.359 2.47
Click to View Chart Preview Click for Info At2g36670 Arabidopsis thaliana 18,128 uncertain 1.337 2.536
Click to View Chart Preview Click for Info T5M16.7 [AT1G77480] Arabidopsis thaliana 18,207 uncertain 2.941 1.005
Click to View Chart Preview Click for Info At3g02740 Arabidopsis thaliana 18,646 uncertain 1.548 2.446
Click to View Chart Preview Click for Info At1g49050 Arabidopsis thaliana 18,888 uncertain 2.709 1.324
Click to View Chart Preview Click for Info F3A4.130 [AT3G50050] Arabidopsis thaliana 20,148 uncertain 2.347 2.278

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of PEP4 (from probeset YPL154C).

Click to enlarge