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Saccharomyces cerevisiae

Cyclebase periodic rank: 587

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 3.88E-4
P(reg)
= 9.547E-6
Peaktime
= M/G1 (1%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info ALD6 [YPL061W] Saccharomyces cerevisiae 73 M 6.22E-15 9.44E-12
Periodic
Click to View Chart Preview Click for Info SPAC9E9.09c Schizosaccharomyces pombe 398 G2 0.001 4.12E-15
Periodic
Click to View Chart Preview Click for Info meu8 [SPCC550.10] Schizosaccharomyces pombe 1,087 uncertain 0.003 1.03E-5
Click to View Chart Preview Click for Info SPAC922.07c Schizosaccharomyces pombe 1,559 uncertain 8.6E-4 0.011
Click to View Chart Preview Click for Info ALD3 [YMR169C] Saccharomyces cerevisiae 1,730 uncertain 0.649 5.59E-5
Click to View Chart Preview Click for Info ALDH10A9 [AT3G48170] Arabidopsis thaliana 1,977 uncertain 0.016 1.619
Click to View Chart Preview Click for Info ALD5 [YER073W] Saccharomyces cerevisiae 2,578 uncertain 0.009 0.59
Click to View Chart Preview Click for Info ALDH11A3 [AT2G24270] Arabidopsis thaliana 2,761 uncertain 0.108 0.334
Click to View Chart Preview Click for Info ALDH2B7 [AT1G23800] Arabidopsis thaliana 2,961 uncertain 0.057 0.853
Click to View Chart Preview Click for Info ALDH2B4 [AT3G48000] Arabidopsis thaliana 3,163 uncertain 0.072 0.743
Click to View Chart Preview Click for Info ALD2 [YMR170C] Saccharomyces cerevisiae 3,961 uncertain 20.33 0.02
Click to View Chart Preview Click for Info RALDH2 [ENSG00000128918] Homo sapiens 5,556 uncertain 0.087 0.293
Click to View Chart Preview Click for Info ALDH8A1 [ENSG00000118514] Homo sapiens 8,764 uncertain 2.936 0.071
Click to View Chart Preview Click for Info ALDH9A1 [ENSG00000143149] Homo sapiens 9,197 uncertain 0.581 0.468
Click to View Chart Preview Click for Info ALDH16A1 [ENSG00000161618] Homo sapiens 9,593 uncertain 1.521 0.225
Click to View Chart Preview Click for Info ALDH1A1 [ENSG00000165092] Homo sapiens 11,873 uncertain 2.385 0.609
Click to View Chart Preview Click for Info ALDH2C4 [AT3G24503] Arabidopsis thaliana 17,104 uncertain 1.474 1.709
Click to View Chart Preview Click for Info ALDH10A8 [AT1G74920] Arabidopsis thaliana 18,805 uncertain 1.536 2.569

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of ALD4 (from probeset YOR374W).

Click to enlarge