Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 5,813



Gene Features:

[hide] [show]
Degradation Signals:
  1. KENbox

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 317.3
P(reg)
= 0.3844
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info MCO15.15 [AT5G55200] Arabidopsis thaliana 681 uncertain 0.018 0.196
Click to View Chart Preview Click for Info At1g36390 Arabidopsis thaliana 1,444 uncertain 0.007 1.685
Click to View Chart Preview Click for Info mge1 [SPBC3B9.19] Schizosaccharomyces pombe 1,701 uncertain 9.31E-8 0.493
Click to View Chart Preview Click for Info F10M23.120 [AT4G26780] Arabidopsis thaliana 8,579 uncertain 1.26 0.149
Click to View Chart Preview Click for Info GRPEL2 [ENSG00000164284] Homo sapiens 10,264 uncertain 1.044 0.485
Click to View Chart Preview Click for Info grpE [AT5G17710] Arabidopsis thaliana 12,686 uncertain 0.467 1.962

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of MGE1 (from probeset YOR232W).

Click to enlarge