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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,996



Gene Features:

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Degradation Signals:
  1. Dbox
  2. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0159
P(reg)
= 1.559
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info wis1 [SPBC409.07c] Schizosaccharomyces pombe 408 G2 9.74E-13 3.28E-5
Periodic
Click to View Chart Preview Click for Info MKK4 [AT1G51660] Arabidopsis thaliana 714 uncertain 0.004 0.723
Click to View Chart Preview Click for Info byr1 [SPAC1D4.13] Schizosaccharomyces pombe 1,640 uncertain 0.092 6.44E-6
Click to View Chart Preview Click for Info F27G20_9 [AT1G32320] Arabidopsis thaliana 1,812 uncertain 0.013 1.671
Click to View Chart Preview Click for Info MKK6 [AT5G56580] Arabidopsis thaliana 2,273 uncertain 0.146 0.143
Click to View Chart Preview Click for Info skh1 [SPBC543.07] Schizosaccharomyces pombe 2,887 uncertain 5.79E-4 3.894
Click to View Chart Preview Click for Info STE7 [YDL159W] Saccharomyces cerevisiae 4,078 uncertain 0.322 1.677
Click to View Chart Preview Click for Info MEK1 [ENSG00000169032] Homo sapiens 4,150 uncertain 0.005 1.716
Click to View Chart Preview Click for Info MKK2 [YPL140C] Saccharomyces cerevisiae 5,250 uncertain 5.953 2.634
Click to View Chart Preview Click for Info PBS2 [YJL128C] Saccharomyces cerevisiae 6,036 uncertain 261.7 2.243
Click to View Chart Preview Click for Info MKK5 [AT3G21220] Arabidopsis thaliana 9,278 uncertain 0.204 1.868
Click to View Chart Preview Click for Info ATMKK3 [AT5G40440] Arabidopsis thaliana 9,422 uncertain 1.836 0.11
Click to View Chart Preview Click for Info At3g06230 Arabidopsis thaliana 11,062 uncertain 2.393 0.142
Click to View Chart Preview Click for Info MKK2 [AT4G29810] Arabidopsis thaliana 12,121 uncertain 0.455 1.705
Click to View Chart Preview Click for Info At1g18350 Arabidopsis thaliana 15,360 uncertain 0.985 1.758
Click to View Chart Preview Click for Info T9L24.32 [AT1G73500] Arabidopsis thaliana 15,600 uncertain 2.975 0.49
Click to View Chart Preview Click for Info MKK1 [AT4G26070] Arabidopsis thaliana 15,989 uncertain 1.387 1.37

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of MKK1 (from probeset YOR231W).

Click to enlarge