Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 3,905



Gene Features:

[hide] [show]
Degradation Signals:
  1. Dbox
  2. KENbox

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.2295
P(reg)
= 1.489
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info F8L10.1 [AT1G53140] Arabidopsis thaliana 257 M/G1 0.002 0.15
Periodic
Click to View Chart Preview Click for Info DRP1C [AT1G14830] Arabidopsis thaliana 1,413 uncertain 0.01 1.267
Click to View Chart Preview Click for Info VPS1 [YKR001C] Saccharomyces cerevisiae 1,426 uncertain 2.18E-7 1.35
Click to View Chart Preview Click for Info vps1 [SPAC767.01c] Schizosaccharomyces pombe 2,003 uncertain 2.12E-5 0.337
Click to View Chart Preview Click for Info MX2 [ENSG00000183486] Homo sapiens 2,063 uncertain 0.004 0.152
Click to View Chart Preview Click for Info DRP1A [AT5G42080] Arabidopsis thaliana 4,234 uncertain 0.041 2.561
Click to View Chart Preview Click for Info msp1 [SPBC1718.06] Schizosaccharomyces pombe 4,244 uncertain 240.751 0.436
Click to View Chart Preview Click for Info DVLP [ENSG00000087470] Homo sapiens 4,350 uncertain 0.933 0.01
Click to View Chart Preview Click for Info C7orf55 [ENSG00000164898] Homo sapiens 4,351 uncertain 0.933 0.01
Click to View Chart Preview Click for Info dnm1 [SPBC12C2.08] Schizosaccharomyces pombe 4,426 uncertain 832.078 0.352
Click to View Chart Preview Click for Info DNM1 [YLL001W] Saccharomyces cerevisiae 5,088 uncertain 12.45 0.771
Click to View Chart Preview Click for Info DNM1 [ENSG00000106976] Homo sapiens 6,404 uncertain 0.035 1.307
Click to View Chart Preview Click for Info At1g60500 Arabidopsis thaliana 6,776 uncertain 1.18 0.074
Click to View Chart Preview Click for Info C15orf51 [ENSG00000182397] Homo sapiens 7,617 uncertain 1.999 0.051
Click to View Chart Preview Click for Info At1g60530 Arabidopsis thaliana 8,209 uncertain 2.384 0.019
Click to View Chart Preview Click for Info ARC5 [AT3G19720] Arabidopsis thaliana 10,339 uncertain 0.282 1.749
Click to View Chart Preview Click for Info MxA [ENSG00000157601] Homo sapiens 10,476 uncertain 0.745 0.787
Click to View Chart Preview Click for Info DRP1E [AT3G60190] Arabidopsis thaliana 11,185 uncertain 0.325 1.903
Click to View Chart Preview Click for Info DRP2A [AT1G10290] Arabidopsis thaliana 12,459 uncertain 0.433 2.008
Click to View Chart Preview Click for Info DRP3A [AT4G33650] Arabidopsis thaliana 15,947 uncertain 0.839 2.482
Click to View Chart Preview Click for Info DRP1B [AT3G61760] Arabidopsis thaliana 16,279 uncertain 1.031 2.097
Click to View Chart Preview Click for Info DRP2B [AT1G59610] Arabidopsis thaliana 19,550 uncertain 2.046 2.218
Click to View Chart Preview Click for Info DRP1D [AT2G44590] Arabidopsis thaliana 19,807 uncertain 2.362 2.029
Click to View Chart Preview Click for Info DRP3B [AT2G14120] Arabidopsis thaliana 20,487 uncertain 2.579 2.327

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of MGM1 (from probeset YOR211C).

Click to enlarge