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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,734



Gene Features:

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Degradation Signals:
  1. KENbox
Phosphorylated By:
  1. Cdc28p

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.68
P(reg)
= 0.0792
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info PIG1 [YLR273C] Saccharomyces cerevisiae 110 M/G1 6.56E-20 1.8E-4
Periodic
Click to View Chart Preview Click for Info PPP1R3D [ENSG00000132825] Homo sapiens 968 uncertain 0.012 0.001
Click to View Chart Preview Click for Info GIP2 [YER054C] Saccharomyces cerevisiae 1,574 uncertain 2.39E-4 0.23
Click to View Chart Preview Click for Info PIG2 [YIL045W] Saccharomyces cerevisiae 2,618 uncertain 0.011 0.563
Click to View Chart Preview Click for Info C6orf47 [ENSG00000204439] Homo sapiens 9,574 uncertain 0.502 0.672
Click to View Chart Preview Click for Info PPP1R3C [ENSG00000119938] Homo sapiens 11,287 uncertain 1.277 0.785
Click to View Chart Preview Click for Info EPC2 [ENSG00000135999] Homo sapiens 11,288 uncertain 1.277 0.785
Click to View Chart Preview Click for Info PPP1R3 [ENSG00000154415] Homo sapiens 13,073 uncertain 4.578 0.832

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of GAC1 (from probeset YOR178C).

Click to enlarge