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Saccharomyces cerevisiae

Cyclebase periodic rank: 4,811



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 8.965
P(reg)
= 0.4773
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPAC29B12.14c Schizosaccharomyces pombe 2,712 uncertain 0.437 0.052
Click to View Chart Preview Click for Info fur4 [SPAC1399.03] Schizosaccharomyces pombe 2,935 uncertain 1.56 0.016
Click to View Chart Preview Click for Info SPBC1683.05 Schizosaccharomyces pombe 2,945 uncertain 1.219 0.037
Click to View Chart Preview Click for Info FUR4 [YBR021W] Saccharomyces cerevisiae 3,159 uncertain 0.096 0.424
Click to View Chart Preview Click for Info THI7 [YLR237W] Saccharomyces cerevisiae 3,207 uncertain 0.419 0.108
Click to View Chart Preview Click for Info DAL4 [YIR028W] Saccharomyces cerevisiae 4,784 uncertain 707.4 0.006
Click to View Chart Preview Click for Info THI72 [YOR192C] Saccharomyces cerevisiae 4,915 uncertain 6.547 0.876
Click to View Chart Preview Click for Info FUI1 [YBL042C] Saccharomyces cerevisiae 5,411 uncertain 76.11 0.331
Click to View Chart Preview Click for Info F12E4_350 [AT5G03555] Arabidopsis thaliana 8,280 uncertain 1.108 0.164

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of NRT1 (from probeset YOR071C).

Click to enlarge