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Saccharomyces cerevisiae

Cyclebase periodic rank: 483

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 4.12E-9
P(reg)
= 0.0022
Peaktime
= S (30%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info PEX11D [AT2G45740] Arabidopsis thaliana 1,630 uncertain 0.059 0.237
Click to View Chart Preview Click for Info PEX11B [ENSG00000131779] Homo sapiens 1,745 uncertain 4.81E-4 0.596
Click to View Chart Preview Click for Info PEX11A [ENSG00000166821] Homo sapiens 2,522 uncertain 0.03 0.043
Click to View Chart Preview Click for Info SPBC582.09 Schizosaccharomyces pombe 3,517 uncertain 3.981 0.866
Click to View Chart Preview Click for Info PEX11B [AT3G47430] Arabidopsis thaliana 8,840 uncertain 2.718 0.02
Click to View Chart Preview Click for Info PEX11G [ENSG00000104883] Homo sapiens 11,204 uncertain 1.403 0.673
Click to View Chart Preview Click for Info PEX11C [AT1G01820] Arabidopsis thaliana 16,860 uncertain 1.446 1.637
Click to View Chart Preview Click for Info PEX11E [AT3G61070] Arabidopsis thaliana 19,468 uncertain 2.638 1.593

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of PEX11 (from probeset YOL147C).

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