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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,517



Gene Features:

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Degradation Signals:
  1. Dbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 3.658
P(reg)
= 9.566E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info NRAMP6 [AT1G15960] Arabidopsis thaliana 352 M 0.018 0.016
Periodic
Click to View Chart Preview Click for Info SMF3 [YLR034C] Saccharomyces cerevisiae 615 uncertain 1.36E-10 0.046
Click to View Chart Preview Click for Info pdt1 [SPAC27F1.08] Schizosaccharomyces pombe 790 uncertain 9.68E-11 0.009
Click to View Chart Preview Click for Info SMF2 [YHR050W] Saccharomyces cerevisiae 1,107 uncertain 3.32E-4 0.021
Click to View Chart Preview Click for Info NRAMP2 [AT1G47240] Arabidopsis thaliana 1,486 uncertain 0.01 1.429
Click to View Chart Preview Click for Info LSH [ENSG00000018280] Homo sapiens 4,838 uncertain 0.024 0.617
Click to View Chart Preview Click for Info NRAMP4 [AT5G67330] Arabidopsis thaliana 11,312 uncertain 0.362 1.744
Click to View Chart Preview Click for Info NRAMP3 [AT2G23150] Arabidopsis thaliana 14,269 uncertain 0.827 1.588
Click to View Chart Preview Click for Info EIN2 [AT5G03280] Arabidopsis thaliana 17,842 uncertain 1.675 1.801
Click to View Chart Preview Click for Info NRAMP1 [AT1G80830] Arabidopsis thaliana 18,852 uncertain 2.604 1.377
Click to View Chart Preview Click for Info NRAMP5 [AT4G18790] Arabidopsis thaliana 20,163 uncertain 2.994 1.708

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SMF1 (from probeset YOL122C).

Click to enlarge