Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 3,383



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 156.2
P(reg)
= 1.201E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info RPP2B [YDR382W] Saccharomyces cerevisiae 836 uncertain 0.002 9.08E-4
Click to View Chart Preview Click for Info rpp202 [SPBC23G7.15c] Schizosaccharomyces pombe 2,328 uncertain 0.469 4.12E-4
Click to View Chart Preview Click for Info rpp203 [SPAC1071.08] Schizosaccharomyces pombe 3,382 uncertain 5.474 0.061
Click to View Chart Preview Click for Info rpp201 [SPBP8B7.06] Schizosaccharomyces pombe 3,753 uncertain 20.646 0.137
Click to View Chart Preview Click for Info RPP2E [AT5G40040] Arabidopsis thaliana 4,562 uncertain 0.669 0.063
Click to View Chart Preview Click for Info RPP2D [AT3G44590] Arabidopsis thaliana 12,928 uncertain 1.523 0.501
Click to View Chart Preview Click for Info RPP2C [AT3G28500] Arabidopsis thaliana 14,506 uncertain 1.325 0.957
Click to View Chart Preview Click for Info RPP2B [AT2G27710] Arabidopsis thaliana 17,646 uncertain 2.297 1.167
Click to View Chart Preview Click for Info RPP2A [AT2G27720] Arabidopsis thaliana 20,032 uncertain 2.941 1.664

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of RPP2A (from probeset YOL039W).

Click to enlarge