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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,811



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0295
P(reg)
= 0.4253
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info caf1 [SPCC18.06c] Schizosaccharomyces pombe 1,971 uncertain 3.51E-7 1.132
Click to View Chart Preview Click for Info At5g10960 Arabidopsis thaliana 3,697 uncertain 0.037 2.21
Click to View Chart Preview Click for Info POP2 [ENSG00000155508] Homo sapiens 6,846 uncertain 1.971 0.032
Click to View Chart Preview Click for Info T10D17_50 [AT3G44260] Arabidopsis thaliana 10,432 uncertain 0.35 1.388
Click to View Chart Preview Click for Info At1g80780 Arabidopsis thaliana 11,993 uncertain 0.393 1.956
Click to View Chart Preview Click for Info T10D17_30 [AT3G44240] Arabidopsis thaliana 12,336 uncertain 0.384 2.241
Click to View Chart Preview Click for Info At5g22250 Arabidopsis thaliana 14,816 uncertain 1.35 1.028
Click to View Chart Preview Click for Info AT1g06450 Arabidopsis thaliana 16,788 uncertain 1.282 1.844
Click to View Chart Preview Click for Info At2g32070 Arabidopsis thaliana 20,640 uncertain 2.898 2.183
Click to View Chart Preview Click for Info At1g15920 Arabidopsis thaliana 20,740 uncertain 2.613 2.588

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of POP2 (from probeset YNR052C).

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