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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,084



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0218
P(reg)
= 0.0419
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
* Y-axis rescaled to remove outlier(s)
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info BUB2 [YMR055C] Saccharomyces cerevisiae 1,008 uncertain 2.74E-8 0.285
Click to View Chart Preview Click for Info gyp3 [SPCC4G3.09c] Schizosaccharomyces pombe 1,074 uncertain 1.88E-9 0.045
Click to View Chart Preview Click for Info MSB4 [YOL112W] Saccharomyces cerevisiae 1,121 uncertain 1.45E-7 0.307
Click to View Chart Preview Click for Info cdc16 [SPAC6F6.08c] Schizosaccharomyces pombe 1,254 uncertain 2.23E-6 0.015
Click to View Chart Preview Click for Info T15C9_20 [AT3G55020] Arabidopsis thaliana 1,296 uncertain 0.011 0.976
Click to View Chart Preview Click for Info TBC1D30 [ENSG00000111490] Homo sapiens 1,814 uncertain 0.039 0.009
Click to View Chart Preview Click for Info SPAC4G8.04 Schizosaccharomyces pombe 3,902 uncertain 195.635 0.002
Click to View Chart Preview Click for Info At2g37290 Arabidopsis thaliana 5,762 uncertain 2.214 8.11E-4
Click to View Chart Preview Click for Info AT2g39280 Arabidopsis thaliana 6,085 uncertain 0.077 2.382
Click to View Chart Preview Click for Info GRTP1 [ENSG00000139835] Homo sapiens 6,356 uncertain 0.111 0.403
Click to View Chart Preview Click for Info At3g07890 Arabidopsis thaliana 12,566 uncertain 0.678 1.208

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of MSB3 (from probeset YNL293W).

Click to enlarge