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Saccharomyces cerevisiae

Cyclebase periodic rank: 431

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.388E-12
P(reg)
= 0.0117
Peaktime
= G1 (21%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info CSR1 [YLR380W] Saccharomyces cerevisiae 247 S 5.94E-15 6.56E-4
Periodic
Click to View Chart Preview Click for Info SPAC589.09 Schizosaccharomyces pombe 373 M 3.51E-7 1.45E-11
Periodic
Click to View Chart Preview Click for Info SPCC23B6.04c Schizosaccharomyces pombe 393 G2 2.69E-11 5.29E-7
Periodic
Click to View Chart Preview Click for Info SPBC365.01 Schizosaccharomyces pombe 508 uncertain 1.93E-11 1.24E-4
Click to View Chart Preview Click for Info At1g22180 Arabidopsis thaliana 826 uncertain 0.011 0.461
Click to View Chart Preview Click for Info PDR17 [YNL264C] Saccharomyces cerevisiae 1,769 uncertain 6.58E-6 1.54
Click to View Chart Preview Click for Info MOSPD2 [ENSG00000130150] Homo sapiens 2,087 uncertain 0.003 0.209
Click to View Chart Preview Click for Info SPAC3H8.02 Schizosaccharomyces pombe 2,792 uncertain 3.68E-5 6.634
Click to View Chart Preview Click for Info YUP8H12.1 [AT1G05370] Arabidopsis thaliana 6,282 uncertain 1.502 0.018
Click to View Chart Preview Click for Info AT4g08690 Arabidopsis thaliana 9,429 uncertain 1.495 0.156
Click to View Chart Preview Click for Info At1g75170 Arabidopsis thaliana 12,453 uncertain 1.263 0.549
Click to View Chart Preview Click for Info At4g36640 Arabidopsis thaliana 15,166 uncertain 3.028 0.423
Click to View Chart Preview Click for Info At1g01630 Arabidopsis thaliana 18,560 uncertain 2.093 1.661
Click to View Chart Preview Click for Info At1g14820 Arabidopsis thaliana 18,710 uncertain 1.749 2.144
Click to View Chart Preview Click for Info AT5g63060 Arabidopsis thaliana 19,885 uncertain 2.483 1.956

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of PDR16 (from probeset YNL231C).

Click to enlarge