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Saccharomyces cerevisiae

Cyclebase periodic rank: 982



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0071
P(reg)
= 6.693E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info rpl7a [SPAC664.06] Schizosaccharomyces pombe 446 G2 4.06E-13 4.29E-4
Periodic
Click to View Chart Preview Click for Info rpl7c [SPBC18H10.12c] Schizosaccharomyces pombe 2,119 uncertain 0.125 0.002
Click to View Chart Preview Click for Info RPL7B [YPL198W] Saccharomyces cerevisiae 2,784 uncertain 5.953 0.002
Click to View Chart Preview Click for Info rpl7b [SPAC3H5.07] Schizosaccharomyces pombe 3,687 uncertain 6.437 1.52
Click to View Chart Preview Click for Info RPL7A [YGL076C] Saccharomyces cerevisiae 5,988 uncertain 5666 0.069
Click to View Chart Preview Click for Info RPL7B [AT2G01250] Arabidopsis thaliana 10,226 uncertain 0.393 1.129
Click to View Chart Preview Click for Info RPL7C [AT2G44120] Arabidopsis thaliana 11,557 uncertain 1.176 0.448
Click to View Chart Preview Click for Info RPL7D [AT3G13580] Arabidopsis thaliana 12,570 uncertain 0.424 2.13
Click to View Chart Preview Click for Info RPL7A [AT1G80750] Arabidopsis thaliana 12,647 uncertain 1.641 0.421

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of RLP7 (from probeset YNL002C).

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