Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 1,460



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 3.338E-4
P(reg)
= 0.1232
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info OLE1 [YGL055W] Saccharomyces cerevisiae 311 G1 7.3E-5 7.5E-12
Periodic
Click to View Chart Preview Click for Info CYB5 [YNL111C] Saccharomyces cerevisiae 433 G2 1.22E-8 2.08E-4
Periodic
Click to View Chart Preview Click for Info SPAC19G12.08 Schizosaccharomyces pombe 606 uncertain 1.61E-11 0.002
Click to View Chart Preview Click for Info SPCC1281.06c Schizosaccharomyces pombe 681 uncertain 0.004 3.08E-11
Click to View Chart Preview Click for Info At2g32720 Arabidopsis thaliana 883 uncertain 0.026 0.21
Click to View Chart Preview Click for Info CYB5D1 [ENSG00000182224] Homo sapiens 1,832 uncertain 0.813 4.32E-4
Click to View Chart Preview Click for Info CYB2 [YML054C] Saccharomyces cerevisiae 3,148 uncertain 55.29 3.32E-4
Click to View Chart Preview Click for Info At2g46650 Arabidopsis thaliana 3,711 uncertain 1.235 4.36E-4
Click to View Chart Preview Click for Info oca8 [SPCC16A11.10c] Schizosaccharomyces pombe 4,087 uncertain 65.141 0.833
Click to View Chart Preview Click for Info SPBC29A10.16c Schizosaccharomyces pombe 4,170 uncertain 68.977 4.182
Click to View Chart Preview Click for Info CYB5A [ENSG00000166347] Homo sapiens 4,844 uncertain 0.07 0.215
Click to View Chart Preview Click for Info NIA1 [AT1G77760] Arabidopsis thaliana 6,152 uncertain 2.217 0.002
Click to View Chart Preview Click for Info At1g60660 Arabidopsis thaliana 6,794 uncertain 0.133 1.532
Click to View Chart Preview Click for Info AT4g20870 Arabidopsis thaliana 7,826 uncertain 0.142 1.908
Click to View Chart Preview Click for Info FA2H [ENSG00000103089] Homo sapiens 7,873 uncertain 3.834 0.032
Click to View Chart Preview Click for Info At5g48810 Arabidopsis thaliana 13,146 uncertain 0.672 1.448
Click to View Chart Preview Click for Info FAH1 [AT2G34770] Arabidopsis thaliana 14,924 uncertain 1.316 1.096
Click to View Chart Preview Click for Info NIA2 [AT1G37130] Arabidopsis thaliana 18,189 uncertain 2.737 1.089
Click to View Chart Preview Click for Info At1g26340 Arabidopsis thaliana 18,454 uncertain 2.774 1.151
Click to View Chart Preview Click for Info At5g53560 Arabidopsis thaliana 20,420 uncertain 2.48 2.373

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SCS7 (from probeset YMR272C).

Click to enlarge