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Saccharomyces cerevisiae

Cyclebase periodic rank: 998



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 3.285E-9
P(reg)
= 0.541
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info VPH1 [YOR270C] Saccharomyces cerevisiae 1,126 uncertain 3.76E-7 0.226
Click to View Chart Preview Click for Info TCIRG1 [ENSG00000110719] Homo sapiens 1,218 uncertain 7.78E-5 0.629
Click to View Chart Preview Click for Info vph1 [SPAC16E8.07c] Schizosaccharomyces pombe 2,231 uncertain 0.002 0.181
Click to View Chart Preview Click for Info a1 [ENSG00000033627] Homo sapiens 10,378 uncertain 0.075 7.36
Click to View Chart Preview Click for Info a4 [ENSG00000105929] Homo sapiens 10,823 uncertain 2.087 0.351
Click to View Chart Preview Click for Info At4g39080 Arabidopsis thaliana 12,959 uncertain 0.399 2.556
Click to View Chart Preview Click for Info At2g21410 Arabidopsis thaliana 14,184 uncertain 0.907 1.382
Click to View Chart Preview Click for Info At2g28520 Arabidopsis thaliana 14,260 uncertain 0.573 2.462

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of STV1 (from probeset YMR054W).

Click to enlarge