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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,826



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.042
P(reg)
= 0.0086
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info NDE1 [YMR145C] Saccharomyces cerevisiae 384 G2 3.43E-9 2.68E-5
Periodic
Click to View Chart Preview Click for Info SPBC947.15c Schizosaccharomyces pombe 395 M/G1 6E-14 2.3E-4
Periodic
Click to View Chart Preview Click for Info At2g20800 Arabidopsis thaliana 645 uncertain 0.04 0.028
Click to View Chart Preview Click for Info SPAC3A11.07 Schizosaccharomyces pombe 1,846 uncertain 0.054 6.62E-4
Click to View Chart Preview Click for Info NDE2 [YDL085W] Saccharomyces cerevisiae 3,721 uncertain 7.667 0.027
Click to View Chart Preview Click for Info AT4g28220 Arabidopsis thaliana 4,575 uncertain 0.254 0.322
Click to View Chart Preview Click for Info NDC1 [AT5G08740] Arabidopsis thaliana 6,868 uncertain 0.093 2.399
Click to View Chart Preview Click for Info F10K1.11 [AT1G07180] Arabidopsis thaliana 7,576 uncertain 1.687 0.044
Click to View Chart Preview Click for Info AT4g21490 Arabidopsis thaliana 8,663 uncertain 0.663 0.371
Click to View Chart Preview Click for Info T32N4.4 [AT4G05020] Arabidopsis thaliana 11,866 uncertain 1.102 0.537
Click to View Chart Preview Click for Info AT2g29990 Arabidopsis thaliana 12,492 uncertain 0.675 1.187
Click to View Chart Preview Click for Info F26G5_140 [AT3G44190] Arabidopsis thaliana 16,722 uncertain 1.043 2.32

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of NDI1 (from probeset YML120C).

Click to enlarge