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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,029



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.01
P(reg)
= 6.747E-4
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPAC1B3.06c Schizosaccharomyces pombe 982 uncertain 7.27E-9 0.013
Click to View Chart Preview Click for Info erg6 [SPBC16E9.05] Schizosaccharomyces pombe 1,709 uncertain 8.03E-7 0.254
Click to View Chart Preview Click for Info AT1g76090 Arabidopsis thaliana 3,643 uncertain 0.084 0.817
Click to View Chart Preview Click for Info AT3g18000 Arabidopsis thaliana 5,536 uncertain 0.093 1.585
Click to View Chart Preview Click for Info NMT3 [AT1G73600] Arabidopsis thaliana 9,839 uncertain 2.409 0.076
Click to View Chart Preview Click for Info SMT2 [AT1G20330] Arabidopsis thaliana 11,364 uncertain 0.533 1.113
Click to View Chart Preview Click for Info At3g01660 Arabidopsis thaliana 11,688 uncertain 1.972 0.242
Click to View Chart Preview Click for Info TMT [AT1G64970] Arabidopsis thaliana 13,530 uncertain 0.523 2.201
Click to View Chart Preview Click for Info NMT2 [AT1G48600] Arabidopsis thaliana 15,211 uncertain 0.913 1.844
Click to View Chart Preview Click for Info SMT1 [AT5G13710] Arabidopsis thaliana 19,313 uncertain 1.789 2.435

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ERG6 (from probeset YML008C).

Click to enlarge