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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,697



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1716
P(reg)
= 0.0496
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPAC631.02 Schizosaccharomyces pombe 132 G1 6.07E-25 3.99E-9
Periodic
Click to View Chart Preview Click for Info F12B17_100 [AT5G10550] Arabidopsis thaliana 998 uncertain 0.019 0.377
Click to View Chart Preview Click for Info BDF2 [YDL070W] Saccharomyces cerevisiae 1,298 uncertain 0.004 0.01
Click to View Chart Preview Click for Info BRD2 [ENSG00000112526] Homo sapiens 2,031 uncertain 0.297 0.002
Click to View Chart Preview Click for Info BRD2 [ENSG00000204256] Homo sapiens 2,032 uncertain 0.297 0.002
Click to View Chart Preview Click for Info SPCC191.13 Schizosaccharomyces pombe 2,305 uncertain 7.24E-5 0.755
Click to View Chart Preview Click for Info BRDT [ENSG00000137948] Homo sapiens 3,343 uncertain 2.869 0.001
Click to View Chart Preview Click for Info BRD3 [ENSG00000169925] Homo sapiens 6,558 uncertain 0.158 0.327
Click to View Chart Preview Click for Info F2H15.2 [AT1G17790] Arabidopsis thaliana 11,751 uncertain 1.118 0.511
Click to View Chart Preview Click for Info At2g34900 Arabidopsis thaliana 12,684 uncertain 0.585 1.497
Click to View Chart Preview Click for Info AT5g46550 Arabidopsis thaliana 15,156 uncertain 0.783 2.183
Click to View Chart Preview Click for Info F28J7.10 [AT3G01770] Arabidopsis thaliana 17,060 uncertain 1.771 1.355
Click to View Chart Preview Click for Info At1g06230 Arabidopsis thaliana 17,437 uncertain 1.183 2.449
Click to View Chart Preview Click for Info AT3g27260 Arabidopsis thaliana 17,577 uncertain 1.588 1.791
Click to View Chart Preview Click for Info At5g65630 Arabidopsis thaliana 19,101 uncertain 2.774 1.359
Click to View Chart Preview Click for Info At5g14270 Arabidopsis thaliana 19,145 uncertain 1.684 2.504
Click to View Chart Preview Click for Info F3N23.35 [AT1G73150] Arabidopsis thaliana 20,244 uncertain 3.031 1.74
Click to View Chart Preview Click for Info At5g63330 Arabidopsis thaliana 20,335 uncertain 2.347 2.45
Click to View Chart Preview Click for Info At1g58025 Arabidopsis thaliana 20,597 uncertain 2.526 2.514

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of BDF1 (from probeset YLR399C).

Click to enlarge