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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,080



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.515E-5
P(reg)
= 0.0456
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info RPS30B [YOR182C] Saccharomyces cerevisiae 1,808 uncertain 3.53E-4 0.456
Click to View Chart Preview Click for Info rps30a [SPAC19B12.04] Schizosaccharomyces pombe 3,573 uncertain 22.962 0.01
Click to View Chart Preview Click for Info rps30-2 [SPBC19G7.03c] Schizosaccharomyces pombe 4,075 uncertain 168.486 0.04
Click to View Chart Preview Click for Info FAU [ENSG00000149806] Homo sapiens 8,180 uncertain 1.095 0.134
Click to View Chart Preview Click for Info AT4g29390 Arabidopsis thaliana 11,607 uncertain 0.52 1.237
Click to View Chart Preview Click for Info AT5g56670 Arabidopsis thaliana 12,899 uncertain 1.972 0.36
Click to View Chart Preview Click for Info RPS30A [AT2G19750] Arabidopsis thaliana 15,607 uncertain 2.368 0.649

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of RPS30A (from probeset YLR287C-A).

Click to enlarge