Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 3,428



Gene Features:

[hide] [show]
Degradation Signals:
  1. Dbox

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 0.0486
P(reg)
= 1.729
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info lcb4 [SPAC4A8.07c] Schizosaccharomyces pombe 1,430 uncertain 1.24E-6 0.052
Click to View Chart Preview Click for Info SPHK2 [ENSG00000063176] Homo sapiens 1,863 uncertain 0.571 6.5E-4
Click to View Chart Preview Click for Info LCB4 [YOR171C] Saccharomyces cerevisiae 2,484 uncertain 0.194 0.021
Click to View Chart Preview Click for Info At2g46090 Arabidopsis thaliana 4,325 uncertain 0.043 2.492
Click to View Chart Preview Click for Info RP26 [ENSG00000188452] Homo sapiens 10,095 uncertain 2.344 0.197
Click to View Chart Preview Click for Info LCBK1 [AT5G23450] Arabidopsis thaliana 11,079 uncertain 0.251 2.515
Click to View Chart Preview Click for Info SPHK1 [ENSG00000176170] Homo sapiens 11,901 uncertain 2.471 0.598

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of LCB5 (from probeset YLR260W).

Click to enlarge