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Saccharomyces cerevisiae

Cyclebase periodic rank: 4,540



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 56.95
P(reg)
= 0.0342
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info NEW1 [YPL226W] Saccharomyces cerevisiae 1,047 uncertain 7.84E-8 0.27
Click to View Chart Preview Click for Info elf1 [SPAC3C7.08c] Schizosaccharomyces pombe 2,246 uncertain 1.195 8.56E-6
Click to View Chart Preview Click for Info GCN20 [YFR009W] Saccharomyces cerevisiae 2,343 uncertain 2.4E-4 3.738
Click to View Chart Preview Click for Info SPBC29A3.09c Schizosaccharomyces pombe 2,538 uncertain 0.005 0.498
Click to View Chart Preview Click for Info F13O11.10 [AT1G64790] Arabidopsis thaliana 2,544 uncertain 0.03 1.319
Click to View Chart Preview Click for Info gcn1 [SPAC18G6.05c] Schizosaccharomyces pombe 2,592 uncertain 0.001 0.939
Click to View Chart Preview Click for Info SPCC417.08 Schizosaccharomyces pombe 2,610 uncertain 2.014 1.78E-4
Click to View Chart Preview Click for Info HEF3 [YNL014W] Saccharomyces cerevisiae 3,294 uncertain 0.172 0.342
Click to View Chart Preview Click for Info GCN1 [YGL195W] Saccharomyces cerevisiae 4,714 uncertain 33.82 0.096
Click to View Chart Preview Click for Info GCN1L1 [ENSG00000089154] Homo sapiens 8,589 uncertain 0.174 1.078
Click to View Chart Preview Click for Info ABCF3 [ENSG00000161204] Homo sapiens 9,604 uncertain 0.111 3.1
Click to View Chart Preview Click for Info GCN3 [AT1G64550] Arabidopsis thaliana 17,262 uncertain 2.074 1.185

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of YEF3 (from probeset YLR249W).

Click to enlarge