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Saccharomyces cerevisiae

Cyclebase periodic rank: 5,018



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 7.153
P(reg)
= 1.087
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info YGP1 [YNL160W] Saccharomyces cerevisiae 130 M 7.56E-12 6.38E-12
Periodic
Click to View Chart Preview Click for Info SPAC186.03 Schizosaccharomyces pombe 753 uncertain 7.49E-6 3.15E-6
Click to View Chart Preview Click for Info SPS100 [YHR139C] Saccharomyces cerevisiae 1,480 uncertain 0.009 0.011
Click to View Chart Preview Click for Info SPAC977.12 Schizosaccharomyces pombe 1,929 uncertain 0.014 0.026
Click to View Chart Preview Click for Info SPBPB21E7.09 Schizosaccharomyces pombe 3,494 uncertain 6.194 0.192
Click to View Chart Preview Click for Info ASP1 [YDR321W] Saccharomyces cerevisiae 3,671 uncertain 2.208 0.082
Click to View Chart Preview Click for Info ASP3-4 [YLR160C] Saccharomyces cerevisiae 4,395 uncertain 20.17 0.066
Click to View Chart Preview Click for Info ASP3-2 [YLR157C] Saccharomyces cerevisiae 4,862 uncertain 4.958 1.01
Click to View Chart Preview Click for Info ASP3-3 [YLR158C] Saccharomyces cerevisiae 5,718 uncertain 84.22 0.887

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ASP3-1 (from probeset YLR155C).

Click to enlarge