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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,132



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0756
P(reg)
= 1.127E-5
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SHM1 [AT4G37930] Arabidopsis thaliana 1,865 uncertain 0.012 1.805
Click to View Chart Preview Click for Info shm2 [SPAC18G6.04c] Schizosaccharomyces pombe 3,197 uncertain 0.045 2.965
Click to View Chart Preview Click for Info SHM1 [YBR263W] Saccharomyces cerevisiae 3,575 uncertain 0.503 0.264
Click to View Chart Preview Click for Info SPAC24C9.12c Schizosaccharomyces pombe 3,690 uncertain 8.264 0.804
Click to View Chart Preview Click for Info SHMT2 [ENSG00000182199] Homo sapiens 3,887 uncertain 0.011 0.624
Click to View Chart Preview Click for Info F8B4.220 [AT4G32520] Arabidopsis thaliana 8,544 uncertain 0.591 0.415
Click to View Chart Preview Click for Info At1g22020 Arabidopsis thaliana 9,520 uncertain 0.176 2.383
Click to View Chart Preview Click for Info F18A5.280 [AT4G13890] Arabidopsis thaliana 13,137 uncertain 1.861 0.417
Click to View Chart Preview Click for Info SHMT1 [ENSG00000176974] Homo sapiens 13,550 uncertain 1.636 3.913
Click to View Chart Preview Click for Info F7F23.9 [AT1G36370] Arabidopsis thaliana 14,912 uncertain 2.167 0.595
Click to View Chart Preview Click for Info At5g26780 Arabidopsis thaliana 20,188 uncertain 2.613 2.037

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SHM2 (from probeset YLR058C).

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