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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,517



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0439
P(reg)
= 0.0025
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info T8F5.13 [AT5G03240] Arabidopsis thaliana 313 S 0.002 0.211
Periodic
Click to View Chart Preview Click for Info ubi4 [SPBC337.08c] Schizosaccharomyces pombe 832 uncertain 9.91E-7 3.35E-4
Click to View Chart Preview Click for Info At4g05310 Arabidopsis thaliana 2,737 uncertain 0.372 0.025
Click to View Chart Preview Click for Info At1g55060 Arabidopsis thaliana 4,896 uncertain 1.294 0.004
Click to View Chart Preview Click for Info At4g05250 Arabidopsis thaliana 5,181 uncertain 1.724 0.001
Click to View Chart Preview Click for Info UBL4A [ENSG00000102178] Homo sapiens 5,517 uncertain 0.01 2.445
Click to View Chart Preview Click for Info RUB1 [YDR139C] Saccharomyces cerevisiae 5,636 uncertain 114.4 0.466
Click to View Chart Preview Click for Info At4g05270 Arabidopsis thaliana 5,693 uncertain 2.789 1.8E-4
Click to View Chart Preview Click for Info F11F8_38 [AT3G09790] Arabidopsis thaliana 5,791 uncertain 1.517 0.008
Click to View Chart Preview Click for Info F15I1.3 [AT1G53950] Arabidopsis thaliana 6,174 uncertain 1.851 0.005
Click to View Chart Preview Click for Info T5E8_140 [AT5G09340] Arabidopsis thaliana 6,231 uncertain 2.17 0.002
Click to View Chart Preview Click for Info At4g05240 Arabidopsis thaliana 6,879 uncertain 2.043 0.007
Click to View Chart Preview Click for Info AT4g03370 Arabidopsis thaliana 7,327 uncertain 2.05 0.013
Click to View Chart Preview Click for Info At1g53980 Arabidopsis thaliana 7,859 uncertain 3.05 0.003
Click to View Chart Preview Click for Info FAU [ENSG00000149806] Homo sapiens 8,180 uncertain 1.095 0.134
Click to View Chart Preview Click for Info AT1g65350 Arabidopsis thaliana 8,482 uncertain 0.375 0.715
Click to View Chart Preview Click for Info At1g53930 Arabidopsis thaliana 9,173 uncertain 0.291 1.186
Click to View Chart Preview Click for Info At4g05260 Arabidopsis thaliana 9,798 uncertain 0.384 1.013
Click to View Chart Preview Click for Info At2g32350 Arabidopsis thaliana 10,780 uncertain 2.211 0.144
Click to View Chart Preview Click for Info At5g24240 Arabidopsis thaliana 11,110 uncertain 0.777 0.649
Click to View Chart Preview Click for Info At2g46500 Arabidopsis thaliana 12,380 uncertain 0.474 1.767
Click to View Chart Preview Click for Info At4g05230 Arabidopsis thaliana 12,930 uncertain 1.666 0.449
Click to View Chart Preview Click for Info AT4g05050 Arabidopsis thaliana 14,497 uncertain 1.74 0.685
Click to View Chart Preview Click for Info SEN3 [AT4G05320] Arabidopsis thaliana 14,997 uncertain 0.678 2.482
Click to View Chart Preview Click for Info RUB2 [AT2G35635] Arabidopsis thaliana 15,252 uncertain 0.82 2.124
Click to View Chart Preview Click for Info At5g37640 Arabidopsis thaliana 16,771 uncertain 2.223 0.944
Click to View Chart Preview Click for Info At5g20620 Arabidopsis thaliana 16,945 uncertain 1.034 2.504
Click to View Chart Preview Click for Info AT4g02970 Arabidopsis thaliana 17,547 uncertain 2.718 0.927
Click to View Chart Preview Click for Info At4g05050 [AT4G02890] Arabidopsis thaliana 17,721 uncertain 1.3 2.368
Click to View Chart Preview Click for Info RUB1 [AT1G31340] Arabidopsis thaliana 18,991 uncertain 1.885 2.094
Click to View Chart Preview Click for Info At1g64470 Arabidopsis thaliana 20,297 uncertain 2.409 2.336

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of UBI4 (from probeset YLL039C).

Click to enlarge