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Saccharomyces cerevisiae

Cyclebase periodic rank: 5,366



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 17.12
P(reg)
= 1.267
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info HXT2 [YMR011W] Saccharomyces cerevisiae 88 G1 1.13E-13 4.63E-12
Periodic
Click to View Chart Preview Click for Info str1 [SPBC4F6.09] Schizosaccharomyces pombe 213 uncertain 1.48E-10 1.76E-15
Periodic
Click to View Chart Preview Click for Info ght2 [SPBC4B4.08] Schizosaccharomyces pombe 250 G2 3.03E-16 2.07E-7
Periodic
Click to View Chart Preview Click for Info RGT2 [YDL138W] Saccharomyces cerevisiae 338 M 7.45E-17 0.033
Periodic
Click to View Chart Preview Click for Info HXT6 [YDR343C] Saccharomyces cerevisiae 428 M 7.45E-6 2.65E-7
Periodic
Click to View Chart Preview Click for Info ENB1 [YOL158C] Saccharomyces cerevisiae 462 G2/M 2.66E-7 4.63E-5
Periodic
Click to View Chart Preview Click for Info HXT7 [YDR342C] Saccharomyces cerevisiae 468 M 3.16E-7 5.69E-5
Periodic
Click to View Chart Preview Click for Info int3 [AT2G35740] Arabidopsis thaliana 513 uncertain 0.035 0.009
Click to View Chart Preview Click for Info HXT4 [YHR092C] Saccharomyces cerevisiae 597 M/G1 1.03E-4 5.16E-5
Periodic
Click to View Chart Preview Click for Info ght5 [SPCp008] Schizosaccharomyces pombe 631 uncertain 1.52E-6 3.79E-7
Click to View Chart Preview Click for Info HXT8 [YJL214W] Saccharomyces cerevisiae 652 uncertain 1.46E-5 0.001
Click to View Chart Preview Click for Info itr2 [SPAC20G8.03] Schizosaccharomyces pombe 748 uncertain 4.73E-9 0.001
Click to View Chart Preview Click for Info SPBC3E7.06c Schizosaccharomyces pombe 779 uncertain 9.21E-13 0.039
Click to View Chart Preview Click for Info SIT1 [YEL065W] Saccharomyces cerevisiae 799 uncertain 0.035 9.01E-8
Click to View Chart Preview Click for Info SPBC16A3.17c Schizosaccharomyces pombe 850 uncertain 1.79E-6 3.07E-4
Click to View Chart Preview Click for Info HXT10 [YFL011W] Saccharomyces cerevisiae 887 uncertain 0.009 5.31E-5
Click to View Chart Preview Click for Info HXT3 [YDR345C] Saccharomyces cerevisiae 889 uncertain 0.048 3.87E-7
Click to View Chart Preview Click for Info ght8 [SPCC548.06c] Schizosaccharomyces pombe 1,037 uncertain 2.82E-8 0.013
Click to View Chart Preview Click for Info HXT9 [YJL219W] Saccharomyces cerevisiae 1,179 uncertain 0.153 3.31E-6
Click to View Chart Preview Click for Info ITR2 [YOL103W] Saccharomyces cerevisiae 1,203 uncertain 5.05E-7 0.327
Click to View Chart Preview Click for Info YMR279C Saccharomyces cerevisiae 1,227 uncertain 0.003 0.009
Click to View Chart Preview Click for Info MAL31 [YBR298C] Saccharomyces cerevisiae 1,290 uncertain 6.97E-6 0.225
Click to View Chart Preview Click for Info ARN1 [YHL040C] Saccharomyces cerevisiae 1,293 uncertain 0.07 2.36E-4
Click to View Chart Preview Click for Info ght6 [SPCC1235.13z] Schizosaccharomyces pombe 1,392 uncertain 8.34E-4 0.005
Click to View Chart Preview Click for Info HXT5 [YHR096C] Saccharomyces cerevisiae 1,468 uncertain 0.025 0.004
Click to View Chart Preview Click for Info STP7 [AT4G02050] Arabidopsis thaliana 1,489 uncertain 0.142 0.023
Click to View Chart Preview Click for Info HXT13 [YEL069C] Saccharomyces cerevisiae 1,489 uncertain 0.091 8.3E-4
Click to View Chart Preview Click for Info HXT15 [YDL245C] Saccharomyces cerevisiae 1,535 uncertain 5.99E-4 0.131
Click to View Chart Preview Click for Info YCL073C Saccharomyces cerevisiae 1,571 uncertain 0.089 0.001
Click to View Chart Preview Click for Info ght3 [SPAC1F8.01] Schizosaccharomyces pombe 1,612 uncertain 0.388 5.42E-8
Click to View Chart Preview Click for Info STP13 [AT5G26340] Arabidopsis thaliana 1,757 uncertain 0.015 1.368
Click to View Chart Preview Click for Info HXT11 [YOL156W] Saccharomyces cerevisiae 1,764 uncertain 0.008 0.033
Click to View Chart Preview Click for Info SPAC3H1.06c Schizosaccharomyces pombe 1,852 uncertain 4.47E-4 0.062
Click to View Chart Preview Click for Info HXT1 [YHR094C] Saccharomyces cerevisiae 1,883 uncertain 0.888 1.28E-4
Click to View Chart Preview Click for Info ATR1 [YML116W] Saccharomyces cerevisiae 1,925 uncertain 0.003 0.183
Click to View Chart Preview Click for Info ITR1 [YDR497C] Saccharomyces cerevisiae 2,091 uncertain 0.716 0.001
Click to View Chart Preview Click for Info At3g03090 Arabidopsis thaliana 2,104 uncertain 0.019 1.556
Click to View Chart Preview Click for Info str3 [SPAC1F8.03c] Schizosaccharomyces pombe 2,177 uncertain 1535.902 1.84E-15
Click to View Chart Preview Click for Info HXT16 [YJR158W] Saccharomyces cerevisiae 2,205 uncertain 1.526 5.77E-4
Click to View Chart Preview Click for Info VBA4 [YDR119W] Saccharomyces cerevisiae 2,338 uncertain 0.005 0.506
Click to View Chart Preview Click for Info YOR378W Saccharomyces cerevisiae 2,394 uncertain 0.003 0.979
Click to View Chart Preview Click for Info STP14 [AT1G77210] Arabidopsis thaliana 2,900 uncertain 0.195 0.167
Click to View Chart Preview Click for Info fnx1 [SPBC12C2.13c] Schizosaccharomyces pombe 2,984 uncertain 0.001 4.608
Click to View Chart Preview Click for Info SGE1 [YPR198W] Saccharomyces cerevisiae 2,999 uncertain 0.059 0.421
Click to View Chart Preview Click for Info SPBC1683.03c Schizosaccharomyces pombe 3,024 uncertain 0.013 2.319
Click to View Chart Preview Click for Info MAL11 [YGR289C] Saccharomyces cerevisiae 3,096 uncertain 0.015 2.226
Click to View Chart Preview Click for Info VBA3 [YCL069W] Saccharomyces cerevisiae 3,174 uncertain 1.058 0.04
Click to View Chart Preview Click for Info SPAC1399.02 Schizosaccharomyces pombe 3,249 uncertain 2.573 0.126
Click to View Chart Preview Click for Info ght4 [SPBC1683.08] Schizosaccharomyces pombe 3,433 uncertain 319.269 6.09E-7
Click to View Chart Preview Click for Info ARN2 [YHL047C] Saccharomyces cerevisiae 3,466 uncertain 23.96 0.004
Click to View Chart Preview Click for Info GAL2 [YLR081W] Saccharomyces cerevisiae 3,512 uncertain 16.34 0.007
Click to View Chart Preview Click for Info SFP1 [AT5G27350] Arabidopsis thaliana 3,520 uncertain 1.211 2.98E-4
Click to View Chart Preview Click for Info MPH3 [YJR160C] Saccharomyces cerevisiae 3,552 uncertain 0.058 2.123
Click to View Chart Preview Click for Info itr1 [SPAC4F8.15] Schizosaccharomyces pombe 3,602 uncertain 12.587 0.075
Click to View Chart Preview Click for Info STL1 [YDR536W] Saccharomyces cerevisiae 3,830 uncertain 74.32 0.004
Click to View Chart Preview Click for Info MPH2 [YDL247W] Saccharomyces cerevisiae 3,875 uncertain 1.945 0.161
Click to View Chart Preview Click for Info STP4 [AT3G19930] Arabidopsis thaliana 3,882 uncertain 1.263 6.07E-4
Click to View Chart Preview Click for Info ght1 [SPCC548.07c] Schizosaccharomyces pombe 3,989 uncertain 143.61 0.02
Click to View Chart Preview Click for Info YKR106W Saccharomyces cerevisiae 4,114 uncertain 0.284 2.125
Click to View Chart Preview Click for Info HXT17 [YNR072W] Saccharomyces cerevisiae 4,383 uncertain 0.992 1.276
Click to View Chart Preview Click for Info VBA1 [YMR088C] Saccharomyces cerevisiae 4,740 uncertain 2.166 1.588
Click to View Chart Preview Click for Info str2 [SPCC622.20c] Schizosaccharomyces pombe 4,775 uncertain 34882.705 0.144
Click to View Chart Preview Click for Info MSSP2 [AT4G35300] Arabidopsis thaliana 4,864 uncertain 0.074 1.621
Click to View Chart Preview Click for Info SNF3 [YDL194W] Saccharomyces cerevisiae 4,929 uncertain 32.12 0.184
Click to View Chart Preview Click for Info HXT14 [YNL318C] Saccharomyces cerevisiae 5,116 uncertain 102.9 0.101
Click to View Chart Preview Click for Info YFL040W Saccharomyces cerevisiae 5,262 uncertain 102.4 0.159
Click to View Chart Preview Click for Info SLC2A13 [ENSG00000151229] Homo sapiens 5,274 uncertain 1.175 0.018
Click to View Chart Preview Click for Info YDL199C Saccharomyces cerevisiae 5,633 uncertain 30.45 1.731
Click to View Chart Preview Click for Info AZR1 [YGR224W] Saccharomyces cerevisiae 5,751 uncertain 46.66 1.917
Click to View Chart Preview Click for Info VBA2 [YBR293W] Saccharomyces cerevisiae 5,846 uncertain 40.11 3.762
Click to View Chart Preview Click for Info YDR387C Saccharomyces cerevisiae 5,856 uncertain 44.43 3.613
Click to View Chart Preview Click for Info SUGTL3 [AT1G08900] Arabidopsis thaliana 5,944 uncertain 3.09 1.47E-4
Click to View Chart Preview Click for Info STP10 [AT3G19940] Arabidopsis thaliana 6,192 uncertain 1.907 0.004
Click to View Chart Preview Click for Info STP1 [AT1G11260] Arabidopsis thaliana 7,075 uncertain 1.827 0.018
Click to View Chart Preview Click for Info SUGTL5 [AT3G05400] Arabidopsis thaliana 7,180 uncertain 2.142 0.008
Click to View Chart Preview Click for Info STP3 [AT5G61520] Arabidopsis thaliana 7,889 uncertain 0.232 1.086
Click to View Chart Preview Click for Info PLT6 [AT4G36670] Arabidopsis thaliana 9,139 uncertain 2.83 0.024
Click to View Chart Preview Click for Info AT4g04760 Arabidopsis thaliana 9,182 uncertain 0.533 0.57
Click to View Chart Preview Click for Info STP12 [AT4G21480] Arabidopsis thaliana 9,769 uncertain 0.728 0.461
Click to View Chart Preview Click for Info STP5 [AT1G34580] Arabidopsis thaliana 9,796 uncertain 0.269 1.553
Click to View Chart Preview Click for Info SLC2A8 [ENSG00000136856] Homo sapiens 9,826 uncertain 0.208 1.868
Click to View Chart Preview Click for Info SLC2A10 [ENSG00000197496] Homo sapiens 9,866 uncertain 0.189 2.113
Click to View Chart Preview Click for Info INT4 [AT4G16480] Arabidopsis thaliana 9,978 uncertain 2.867 0.051
Click to View Chart Preview Click for Info At1g75220 Arabidopsis thaliana 10,050 uncertain 0.892 0.388
Click to View Chart Preview Click for Info At5g59250 Arabidopsis thaliana 10,197 uncertain 2.248 0.108
Click to View Chart Preview Click for Info STP2 [AT1G07340] Arabidopsis thaliana 10,799 uncertain 0.418 1.248
Click to View Chart Preview Click for Info At2g48020 Arabidopsis thaliana 11,053 uncertain 1.288 0.339
Click to View Chart Preview Click for Info SUGTL2 [AT1G08920] Arabidopsis thaliana 11,386 uncertain 1.604 0.286
Click to View Chart Preview Click for Info STP8 [AT5G26250] Arabidopsis thaliana 11,467 uncertain 3.046 0.113
Click to View Chart Preview Click for Info SLC2A12 [ENSG00000146411] Homo sapiens 12,297 uncertain 0.409 4.741
Click to View Chart Preview Click for Info ERD6 [AT1G08930] Arabidopsis thaliana 13,148 uncertain 3.099 0.214
Click to View Chart Preview Click for Info At4g04750 Arabidopsis thaliana 13,236 uncertain 1.285 0.679
Click to View Chart Preview Click for Info PLT5 [AT3G18830] Arabidopsis thaliana 13,823 uncertain 2.669 0.331
Click to View Chart Preview Click for Info PLT3 [AT2G18480] Arabidopsis thaliana 14,466 uncertain 0.975 1.373
Click to View Chart Preview Click for Info STP11 [AT5G23270] Arabidopsis thaliana 15,019 uncertain 0.82 1.986
Click to View Chart Preview Click for Info At3g05150 Arabidopsis thaliana 15,071 uncertain 1.82 0.768
Click to View Chart Preview Click for Info STP6 [AT3G05960] Arabidopsis thaliana 15,739 uncertain 0.941 2.052
Click to View Chart Preview Click for Info At1g67300 Arabidopsis thaliana 16,046 uncertain 1.226 1.609
Click to View Chart Preview Click for Info MSSP1 [AT1G20840] Arabidopsis thaliana 16,253 uncertain 1.529 1.294
Click to View Chart Preview Click for Info INT1 [AT2G43330] Arabidopsis thaliana 16,295 uncertain 1.681 1.17
Click to View Chart Preview Click for Info At5g16150 Arabidopsis thaliana 16,700 uncertain 1.619 1.361
Click to View Chart Preview Click for Info At3g20460 Arabidopsis thaliana 17,192 uncertain 2.486 0.935
Click to View Chart Preview Click for Info At1g19450 Arabidopsis thaliana 17,215 uncertain 1.433 1.828
Click to View Chart Preview Click for Info INT2 [AT1G30220] Arabidopsis thaliana 18,235 uncertain 1.57 2.162
Click to View Chart Preview Click for Info STP9 [AT1G50310] Arabidopsis thaliana 18,302 uncertain 1.424 2.472
Click to View Chart Preview Click for Info At5g18840 Arabidopsis thaliana 18,699 uncertain 3.053 1.092
Click to View Chart Preview Click for Info At5g17010 Arabidopsis thaliana 19,562 uncertain 2.706 1.591
Click to View Chart Preview Click for Info MSSP3 [AT3G51490] Arabidopsis thaliana 19,860 uncertain 2.39 2.034
Click to View Chart Preview Click for Info At1g54730 Arabidopsis thaliana 20,171 uncertain 2.864 1.805
Click to View Chart Preview Click for Info At1g79820 Arabidopsis thaliana 20,260 uncertain 2.269 2.477
Click to View Chart Preview Click for Info SFP2 [AT5G27360] Arabidopsis thaliana 20,546 uncertain 3.099 1.917
Click to View Chart Preview Click for Info At1g05030 Arabidopsis thaliana 20,902 uncertain 3.043 2.408

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of VBA5 (from probeset YKR105C).

Click to enlarge