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Saccharomyces cerevisiae

Cyclebase periodic rank: 4,032



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 27.96
P(reg)
= 0.017
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info ubi1 [SPAC11G7.04] Schizosaccharomyces pombe 2,504 uncertain 0.035 0.219
Click to View Chart Preview Click for Info uep1 [SPAC1805.12c] Schizosaccharomyces pombe 3,138 uncertain 0.473 1.035
Click to View Chart Preview Click for Info RPL40A [YIL148W] Saccharomyces cerevisiae 3,724 uncertain 0.375 0.551
Click to View Chart Preview Click for Info UBA52 [ENSG00000196084] Homo sapiens 10,355 uncertain 0.755 0.718
Click to View Chart Preview Click for Info AT3g52590 Arabidopsis thaliana 19,149 uncertain 2.028 2.006
Click to View Chart Preview Click for Info AT2g36170 Arabidopsis thaliana 19,551 uncertain 2.697 1.592

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of RPL40B (from probeset YKR094C).

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