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Saccharomyces cerevisiae

Cyclebase periodic rank: 2,363



Gene Features:

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Degradation Signals:
  1. PEST
Overexpression Phenotype:
  1. Cell Cycle Arrest

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 55.04
P(reg)
= 9.523E-8
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info NRT1:2 [AT1G69850] Arabidopsis thaliana 294 S/G2 0.001 0.264
Periodic
Click to View Chart Preview Click for Info At1g22570 Arabidopsis thaliana 426 uncertain 0.002 0.39
Click to View Chart Preview Click for Info ptr2 [SPBC13A2.04c] Schizosaccharomyces pombe 699 uncertain 8.18E-5 6.37E-8
Click to View Chart Preview Click for Info At1g52190 Arabidopsis thaliana 929 uncertain 0.13 7.04E-4
Click to View Chart Preview Click for Info At5g19640 Arabidopsis thaliana 1,520 uncertain 0.238 0.001
Click to View Chart Preview Click for Info PTR2 [AT2G02040] Arabidopsis thaliana 2,021 uncertain 0.067 0.33
Click to View Chart Preview Click for Info T17F3.10 [AT1G69870] Arabidopsis thaliana 2,082 uncertain 0.254 0.019
Click to View Chart Preview Click for Info ntp2 [AT2G26690] Arabidopsis thaliana 2,714 uncertain 0.901 1.28E-4
Click to View Chart Preview Click for Info At2g40460 Arabidopsis thaliana 3,034 uncertain 0.56 0.007
Click to View Chart Preview Click for Info T6D9_40 [AT3G45710] Arabidopsis thaliana 3,035 uncertain 0.848 6.01E-4
Click to View Chart Preview Click for Info At1g27040 Arabidopsis thaliana 3,041 uncertain 0.057 0.914
Click to View Chart Preview Click for Info CHL1 [AT1G12110] Arabidopsis thaliana 3,068 uncertain 0.628 0.004
Click to View Chart Preview Click for Info AT5g62730 Arabidopsis thaliana 3,369 uncertain 0.037 1.839
Click to View Chart Preview Click for Info F24B22.100 [AT3G54140] Arabidopsis thaliana 3,511 uncertain 0.105 0.573
Click to View Chart Preview Click for Info F2G14_60 [AT5G14940] Arabidopsis thaliana 4,506 uncertain 0.087 1.174
Click to View Chart Preview Click for Info F9K21.230 [AT3G45650] Arabidopsis thaliana 5,312 uncertain 1.978 7.52E-4
Click to View Chart Preview Click for Info F10C21.11 [AT1G33440] Arabidopsis thaliana 5,714 uncertain 0.127 1.153
Click to View Chart Preview Click for Info SLC15A4 [ENSG00000139370] Homo sapiens 6,000 uncertain 0.055 0.642
Click to View Chart Preview Click for Info At2g38100 Arabidopsis thaliana 6,100 uncertain 0.133 1.238
Click to View Chart Preview Click for Info T6D9_30 [AT3G45700] Arabidopsis thaliana 6,616 uncertain 2.375 0.002
Click to View Chart Preview Click for Info PTR3-A [AT5G46050] Arabidopsis thaliana 6,619 uncertain 2.542 0.001
Click to View Chart Preview Click for Info At1g68570 Arabidopsis thaliana 6,754 uncertain 0.192 0.977
Click to View Chart Preview Click for Info At2g02020 Arabidopsis thaliana 7,239 uncertain 0.115 2.081
Click to View Chart Preview Click for Info PTR3-B [AT5G46040] Arabidopsis thaliana 7,391 uncertain 2.455 0.005
Click to View Chart Preview Click for Info TUSC4 [ENSG00000114388] Homo sapiens 7,789 uncertain 0.37 0.31
Click to View Chart Preview Click for Info SLC15A2 [ENSG00000163406] Homo sapiens 7,790 uncertain 0.37 0.31
Click to View Chart Preview Click for Info F5D14.23 [AT1G32450] Arabidopsis thaliana 7,989 uncertain 1.842 0.047
Click to View Chart Preview Click for Info At5g28470 Arabidopsis thaliana 8,028 uncertain 2.334 0.017
Click to View Chart Preview Click for Info At3g01350 Arabidopsis thaliana 8,571 uncertain 2.721 0.014
Click to View Chart Preview Click for Info At1g72140 Arabidopsis thaliana 9,603 uncertain 0.214 1.943
Click to View Chart Preview Click for Info At1g22550 Arabidopsis thaliana 9,742 uncertain 2.084 0.1
Click to View Chart Preview Click for Info At2g37900 Arabidopsis thaliana 10,075 uncertain 2.161 0.109
Click to View Chart Preview Click for Info F17L22.140 [AT4G21680] Arabidopsis thaliana 11,278 uncertain 1.269 0.373
Click to View Chart Preview Click for Info F5K20_260 [AT3G53960] Arabidopsis thaliana 11,622 uncertain 2.3 0.19
Click to View Chart Preview Click for Info ntp3 [AT3G21670] Arabidopsis thaliana 11,762 uncertain 0.477 1.442
Click to View Chart Preview Click for Info SLC15A1 [ENSG00000088386] Homo sapiens 12,178 uncertain 2.302 0.766
Click to View Chart Preview Click for Info F23H11.6 [AT1G59740] Arabidopsis thaliana 13,138 uncertain 0.625 1.575
Click to View Chart Preview Click for Info F15N18_160 [AT5G11570] Arabidopsis thaliana 13,338 uncertain 0.576 1.847
Click to View Chart Preview Click for Info T6D9_10 [AT3G45680] Arabidopsis thaliana 13,744 uncertain 1.656 0.586
Click to View Chart Preview Click for Info NRT1:6 [AT1G27080] Arabidopsis thaliana 14,701 uncertain 0.681 2.268
Click to View Chart Preview Click for Info F28P5.1 [AT1G72130] Arabidopsis thaliana 15,035 uncertain 1.046 1.487
Click to View Chart Preview Click for Info At1g69860 Arabidopsis thaliana 15,966 uncertain 1.697 1.068
Click to View Chart Preview Click for Info F7J8_160 [AT5G01180] Arabidopsis thaliana 16,872 uncertain 1.706 1.346
Click to View Chart Preview Click for Info At1g72115 [AT1G72120] Arabidopsis thaliana 17,151 uncertain 2.471 0.93
Click to View Chart Preview Click for Info At3g25260 Arabidopsis thaliana 17,567 uncertain 1.712 1.633
Click to View Chart Preview Click for Info F19K23.13 [AT1G62200] Arabidopsis thaliana 18,344 uncertain 2.644 1.189
Click to View Chart Preview Click for Info T6D9_20 [AT3G45690] Arabidopsis thaliana 18,469 uncertain 2.734 1.177
Click to View Chart Preview Click for Info T6D9_50 [AT3G45720] Arabidopsis thaliana 19,278 uncertain 1.824 2.36
Click to View Chart Preview Click for Info At3g25280 Arabidopsis thaliana 19,301 uncertain 2.576 1.567
Click to View Chart Preview Click for Info T22N19_50 [AT5G13400] Arabidopsis thaliana 19,519 uncertain 1.978 2.287
Click to View Chart Preview Click for Info F12K8.12 [AT1G22540] Arabidopsis thaliana 19,833 uncertain 2.356 2.054

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of PTR2 (from probeset YKR093W).

Click to enlarge