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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,880



Gene Features:

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Degradation Signals:
  1. KENbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0022
P(reg)
= 0.1929
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info RH58 [AT5G19210] Arabidopsis thaliana 1,000 uncertain 9.63E-4 2.338
Click to View Chart Preview Click for Info TIF4A-3 [AT1G72730] Arabidopsis thaliana 1,992 uncertain 0.051 0.45
Click to View Chart Preview Click for Info TIF2 [YJL138C] Saccharomyces cerevisiae 3,518 uncertain 0.931 0.122
Click to View Chart Preview Click for Info tif1 [SPAC1006.07] Schizosaccharomyces pombe 4,758 uncertain 8742.356 3.85
Click to View Chart Preview Click for Info RH47 [AT1G12770] Arabidopsis thaliana 12,163 uncertain 1.13 0.574
Click to View Chart Preview Click for Info At1g12700 Arabidopsis thaliana 19,720 uncertain 2.879 1.557

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of TIF1 (from probeset YKR059W).

Click to enlarge