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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,464



Gene Features:

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Degradation Signals:
  1. Dbox
Overexpression Phenotype:
  1. G2 Arrest

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0321
P(reg)
= 0.0027
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
* Y-axis rescaled to remove outlier(s)
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info set3 [SPAC22E12.11c] Schizosaccharomyces pombe 1,259 uncertain 1.25E-12 1.908
Click to View Chart Preview Click for Info CTI6 [YPL181W] Saccharomyces cerevisiae 1,335 uncertain 1.4E-5 0.212
Click to View Chart Preview Click for Info SET4 [YJL105W] Saccharomyces cerevisiae 2,052 uncertain 0.004 0.182
Click to View Chart Preview Click for Info PHF23 [ENSG00000040633] Homo sapiens 3,226 uncertain 0.031 0.105
Click to View Chart Preview Click for Info cti6 [SPBC1685.08] Schizosaccharomyces pombe 3,530 uncertain 5.35 0.415
Click to View Chart Preview Click for Info hop1 [SPBC1718.02] Schizosaccharomyces pombe 3,532 uncertain 8.101 0.124
Click to View Chart Preview Click for Info At2g01810 Arabidopsis thaliana 4,140 uncertain 0.071 1.285
Click to View Chart Preview Click for Info MLL5 [ENSG00000005483] Homo sapiens 4,418 uncertain 0.933 0.011
Click to View Chart Preview Click for Info SRPK2 [ENSG00000135250] Homo sapiens 4,419 uncertain 0.933 0.011
Click to View Chart Preview Click for Info DUET [AT1G66170] Arabidopsis thaliana 5,373 uncertain 1.105 0.025
Click to View Chart Preview Click for Info PHF20L1 [ENSG00000197967] Homo sapiens 5,436 uncertain 0.042 0.559
Click to View Chart Preview Click for Info PHF13 [ENSG00000116273] Homo sapiens 8,696 uncertain 0.987 0.203
Click to View Chart Preview Click for Info PHF20L1 [ENSG00000129292] Homo sapiens 10,313 uncertain 0.27 1.95
Click to View Chart Preview Click for Info At1g33420 Arabidopsis thaliana 13,908 uncertain 0.632 1.983

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SET3 (from probeset YKR029C).

Click to enlarge