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Saccharomyces cerevisiae

Cyclebase periodic rank: 211

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 4.832E-14
P(reg)
= 6.338E-6
Peaktime
= M/G1 (0%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info YMR085W Saccharomyces cerevisiae 2,209 uncertain 0.558 0.002
Click to View Chart Preview Click for Info YMR084W Saccharomyces cerevisiae 3,292 uncertain 1.552 0.037
Click to View Chart Preview Click for Info SPBC12C2.11 [SPBC21D10.02] Schizosaccharomyces pombe 4,435 uncertain 736.162 0.648
Click to View Chart Preview Click for Info DUG3 [YNL191W] Saccharomyces cerevisiae 4,556 uncertain 17.83 0.112
Click to View Chart Preview Click for Info GFPT2 [ENSG00000131459] Homo sapiens 9,268 uncertain 0.184 1.533
Click to View Chart Preview Click for Info AT3g24090 Arabidopsis thaliana 16,637 uncertain 2.399 0.832

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of GFA1 (from probeset YKL104C).

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