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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,474



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 4.505
P(reg)
= 0.0211
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info GST6 [AT2G47730] Arabidopsis thaliana 170 S 0.005 0.011
Periodic
Click to View Chart Preview Click for Info GST31 [AT1G02950] Arabidopsis thaliana 216 G2 0.02 2.82E-4
Periodic
Click to View Chart Preview Click for Info gst2 [SPCC965.07c] Schizosaccharomyces pombe 239 uncertain 3.72E-9 2.93E-15
Periodic
Click to View Chart Preview Click for Info gst3 [SPAC688.04c] Schizosaccharomyces pombe 331 S/G2 5.68E-14 4.45E-6
Periodic
Click to View Chart Preview Click for Info SPCC1183.02 Schizosaccharomyces pombe 1,650 uncertain 1.11E-5 0.08
Click to View Chart Preview Click for Info GST26 [AT5G17220] Arabidopsis thaliana 1,949 uncertain 0.604 6.19E-5
Click to View Chart Preview Click for Info SPAC29A4.02c Schizosaccharomyces pombe 2,059 uncertain 9.52E-5 0.258
Click to View Chart Preview Click for Info At2g30860 Arabidopsis thaliana 2,124 uncertain 0.068 0.354
Click to View Chart Preview Click for Info YGR201C Saccharomyces cerevisiae 2,748 uncertain 0.013 0.754
Click to View Chart Preview Click for Info GTT1 [YIR038C] Saccharomyces cerevisiae 2,905 uncertain 52.36 4.08E-5
Click to View Chart Preview Click for Info GSTT2 [ENSG00000099984] Homo sapiens 3,448 uncertain 0.001 3.98
Click to View Chart Preview Click for Info TPM1 [ENSG00000133433] Homo sapiens 3,449 uncertain 0.001 3.98
Click to View Chart Preview Click for Info EEF1E1 [ENSG00000124802] Homo sapiens 3,505 uncertain 0.002 2.913
Click to View Chart Preview Click for Info gst1 [SPCC191.09c] Schizosaccharomyces pombe 3,663 uncertain 2136.778 3.44E-8
Click to View Chart Preview Click for Info CAM1 [YPL048W] Saccharomyces cerevisiae 4,575 uncertain 5.557 0.381
Click to View Chart Preview Click for Info F26K9_190 [AT3G62760] Arabidopsis thaliana 4,611 uncertain 1.167 0.005
Click to View Chart Preview Click for Info URE2 [YNL229C] Saccharomyces cerevisiae 5,454 uncertain 35.04 0.835
Click to View Chart Preview Click for Info GTT2 [YLL060C] Saccharomyces cerevisiae 6,095 uncertain 592.1 2.964
Click to View Chart Preview Click for Info MARS [ENSG00000166986] Homo sapiens 6,102 uncertain 0.221 0.172
Click to View Chart Preview Click for Info At1g49860 Arabidopsis thaliana 8,667 uncertain 2.839 0.013
Click to View Chart Preview Click for Info EF1G [ENSG00000186676] Homo sapiens 8,902 uncertain 0.483 0.472
Click to View Chart Preview Click for Info F22D16.6 [AT1G02940] Arabidopsis thaliana 12,069 uncertain 0.755 0.911
Click to View Chart Preview Click for Info At3g03190 Arabidopsis thaliana 12,347 uncertain 2.771 0.191
Click to View Chart Preview Click for Info gst10b [AT5G41240] Arabidopsis thaliana 12,846 uncertain 1.653 0.442
Click to View Chart Preview Click for Info GSTT1 [ENSG00000184674] Homo sapiens 13,648 uncertain 1.872 3.899
Click to View Chart Preview Click for Info GSTTP1 [ENSG00000185831] Homo sapiens 13,858 uncertain 4.388 2.379
Click to View Chart Preview Click for Info AT1g09640 Arabidopsis thaliana 20,066 uncertain 2.331 2.232
Click to View Chart Preview Click for Info At5g41220 Arabidopsis thaliana 20,252 uncertain 2.786 1.932

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of TEF4 (from probeset YKL081W).

Click to enlarge