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Saccharomyces cerevisiae

Cyclebase periodic rank: 489

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.312E-6
P(reg)
= 3.047E-5
Peaktime
= S/G2 (51%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPCC1322.04 Schizosaccharomyces pombe 80 M/G1 2.07E-31 7.71E-15
Periodic
Click to View Chart Preview Click for Info SPCC794.10 Schizosaccharomyces pombe 4,622 uncertain 3143.424 0.714
Click to View Chart Preview Click for Info YHL012W Saccharomyces cerevisiae 5,442 uncertain 16.5 1.68
Click to View Chart Preview Click for Info At3g03250 Arabidopsis thaliana 5,607 uncertain 0.263 0.46
Click to View Chart Preview Click for Info UGP2 [ENSG00000169764] Homo sapiens 6,840 uncertain 0.287 0.218
Click to View Chart Preview Click for Info At5g17310 Arabidopsis thaliana 18,879 uncertain 1.697 2.32

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of UGP1 (from probeset YKL035W).

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