Cyclebase.org

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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,843



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 22.25
P(reg)
= 0.0126
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info sod1 [SPAC821.10c] Schizosaccharomyces pombe 802 uncertain 1.64E-6 8.79E-5
Click to View Chart Preview Click for Info ccs1 [SPAC22E12.04] Schizosaccharomyces pombe 888 uncertain 1.72E-12 0.099
Click to View Chart Preview Click for Info CSD1 [AT1G08830] Arabidopsis thaliana 5,127 uncertain 0.344 0.275
Click to View Chart Preview Click for Info SOD3 [ENSG00000109610] Homo sapiens 6,335 uncertain 0.032 1.363
Click to View Chart Preview Click for Info SOD1 [ENSG00000142168] Homo sapiens 12,245 uncertain 0.26 7.188
Click to View Chart Preview Click for Info CSD2 [AT2G28190] Arabidopsis thaliana 13,935 uncertain 0.762 1.592
Click to View Chart Preview Click for Info CSD3 [AT5G18100] Arabidopsis thaliana 16,948 uncertain 2.548 0.845

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of SOD1 (from probeset YJR104C).

Click to enlarge