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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,818



Gene Features:

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Degradation Signals:
  1. Dbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.1467
P(reg)
= 1.779
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info AMN1 [YBR158W] Saccharomyces cerevisiae 256 G1 1.27E-5 7.77E-13
Periodic
Click to View Chart Preview Click for Info TIR1 [AT3G62980] Arabidopsis thaliana 556 uncertain 3.07E-4 1.311
Click to View Chart Preview Click for Info At1g80630 Arabidopsis thaliana 1,593 uncertain 0.146 0.031
Click to View Chart Preview Click for Info FBL5 [AT1G77000] Arabidopsis thaliana 2,087 uncertain 0.26 0.017
Click to View Chart Preview Click for Info F7H2.8 [AT1G15740] Arabidopsis thaliana 2,379 uncertain 0.254 0.047
Click to View Chart Preview Click for Info FBX14 [AT4G24390] Arabidopsis thaliana 3,513 uncertain 0.03 2.542
Click to View Chart Preview Click for Info FBL10 [AT2G17020] Arabidopsis thaliana 4,116 uncertain 0.142 0.549
Click to View Chart Preview Click for Info EBF2 [AT5G25350] Arabidopsis thaliana 4,323 uncertain 0.096 0.97
Click to View Chart Preview Click for Info pof2 [SPBC25B2.11] Schizosaccharomyces pombe 4,338 uncertain 241.395 2.247
Click to View Chart Preview Click for Info rhp7 [SPCC613.14] Schizosaccharomyces pombe 4,376 uncertain 841.254 0.123
Click to View Chart Preview Click for Info FBXO39 [ENSG00000177294] Homo sapiens 4,674 uncertain 0.186 0.069
Click to View Chart Preview Click for Info FBL19 [AT4G30640] Arabidopsis thaliana 5,163 uncertain 1.613 0.002
Click to View Chart Preview Click for Info At1g21410 Arabidopsis thaliana 5,544 uncertain 2.768 1.5E-4
Click to View Chart Preview Click for Info RAD7 [YJR052W] Saccharomyces cerevisiae 6,002 uncertain 121.2 3.475
Click to View Chart Preview Click for Info COI1 [AT2G39940] Arabidopsis thaliana 6,369 uncertain 0.08 2.462
Click to View Chart Preview Click for Info EBF1 [AT2G25490] Arabidopsis thaliana 6,988 uncertain 0.146 1.45
Click to View Chart Preview Click for Info SKIP1 [AT5G57900] Arabidopsis thaliana 7,139 uncertain 1.703 0.027
Click to View Chart Preview Click for Info AT5g27920 Arabidopsis thaliana 7,862 uncertain 1.526 0.074
Click to View Chart Preview Click for Info At5g23340 Arabidopsis thaliana 8,158 uncertain 0.303 0.848
Click to View Chart Preview Click for Info At5g51380 Arabidopsis thaliana 8,361 uncertain 0.935 0.215
Click to View Chart Preview Click for Info At5g52480 Arabidopsis thaliana 8,971 uncertain 2.734 0.023
Click to View Chart Preview Click for Info FBXL12 [ENSG00000127452] Homo sapiens 9,491 uncertain 0.179 1.798
Click to View Chart Preview Click for Info FBL21 [AT4G05470] Arabidopsis thaliana 9,511 uncertain 3.059 0.025
Click to View Chart Preview Click for Info At5g40470 Arabidopsis thaliana 9,891 uncertain 0.189 2.44
Click to View Chart Preview Click for Info FBW2 [AT4G08980] Arabidopsis thaliana 10,459 uncertain 0.39 1.225
Click to View Chart Preview Click for Info FBL11 [AT2G36370] Arabidopsis thaliana 10,891 uncertain 0.362 1.525
Click to View Chart Preview Click for Info FBXL4 [ENSG00000112234] Homo sapiens 11,740 uncertain 8.438 0.158
Click to View Chart Preview Click for Info FBL3 [AT5G01720] Arabidopsis thaliana 11,927 uncertain 2.904 0.151
Click to View Chart Preview Click for Info FBXL16 [ENSG00000127585] Homo sapiens 12,117 uncertain 0.78 2.157
Click to View Chart Preview Click for Info At3g48880 Arabidopsis thaliana 13,106 uncertain 0.625 1.561
Click to View Chart Preview Click for Info At5g49980 Arabidopsis thaliana 13,573 uncertain 0.573 1.999
Click to View Chart Preview Click for Info FBL12 [AT3G07550] Arabidopsis thaliana 13,676 uncertain 0.573 2.064
Click to View Chart Preview Click for Info AFB3 [AT1G12820] Arabidopsis thaliana 14,148 uncertain 0.755 1.709
Click to View Chart Preview Click for Info FBL14 [AT1G80570] Arabidopsis thaliana 14,342 uncertain 2.666 0.388
Click to View Chart Preview Click for Info FBL8 [AT4G07400] Arabidopsis thaliana 15,594 uncertain 1.452 1.173
Click to View Chart Preview Click for Info At2g06040 Arabidopsis thaliana 16,190 uncertain 1.879 0.994
Click to View Chart Preview Click for Info AT4g33210 Arabidopsis thaliana 16,193 uncertain 0.848 2.591
Click to View Chart Preview Click for Info AFB2 [AT3G26810] Arabidopsis thaliana 16,203 uncertain 0.941 2.293
Click to View Chart Preview Click for Info FBL22 [AT4G05490] Arabidopsis thaliana 16,415 uncertain 2.028 0.966
Click to View Chart Preview Click for Info FBL16 [AT3G50080] Arabidopsis thaliana 17,132 uncertain 1.077 2.511
Click to View Chart Preview Click for Info FBL20 [AT4G05460] Arabidopsis thaliana 19,194 uncertain 1.715 2.481
Click to View Chart Preview Click for Info ATB [AT1G55590] Arabidopsis thaliana 19,232 uncertain 2.031 2.047
Click to View Chart Preview Click for Info At4g15475 Arabidopsis thaliana 19,494 uncertain 1.978 2.27
Click to View Chart Preview Click for Info AT4g03630 Arabidopsis thaliana 19,637 uncertain 2.755 1.598
Click to View Chart Preview Click for Info AT3g58530 Arabidopsis thaliana 19,740 uncertain 2.043 2.368
Click to View Chart Preview Click for Info SKIP2 [AT5G67250] Arabidopsis thaliana 19,983 uncertain 2.037 2.546

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of GRR1 (from probeset YJR090C).

Click to enlarge