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Saccharomyces cerevisiae

Cyclebase periodic rank: 310

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 8.776E-14
P(reg)
= 0.0017
Peaktime
= S/G2 (50%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info spn7 [SPBC19F8.01c] Schizosaccharomyces pombe 391 G2/M 1.74E-10 7.25E-8
Periodic
Click to View Chart Preview Click for Info spn4 [SPAC9G1.11c] Schizosaccharomyces pombe 1,459 uncertain 9.73E-9 0.304
Click to View Chart Preview Click for Info CDC12 [YHR107C] Saccharomyces cerevisiae 1,691 uncertain 1.59E-5 0.892
Click to View Chart Preview Click for Info spn6 [SPCC584.09] Schizosaccharomyces pombe 1,722 uncertain 0.016 0.003
Click to View Chart Preview Click for Info CDC3 [YLR314C] Saccharomyces cerevisiae 1,926 uncertain 0.002 0.204
Click to View Chart Preview Click for Info SPR28 [YDR218C] Saccharomyces cerevisiae 2,322 uncertain 0.918 0.002
Click to View Chart Preview Click for Info spn3 [SPBC16A3.01] Schizosaccharomyces pombe 3,628 uncertain 0.5 7.325
Click to View Chart Preview Click for Info SPR3 [YGR059W] Saccharomyces cerevisiae 4,053 uncertain 9.299 0.053
Click to View Chart Preview Click for Info spn1 [SPAC4F10.11] Schizosaccharomyces pombe 4,427 uncertain 237.056 15.632
Click to View Chart Preview Click for Info spn5 [SPAC24C9.15c] Schizosaccharomyces pombe 4,700 uncertain 56363.825 0.001
Click to View Chart Preview Click for Info SHS1 [YDL225W] Saccharomyces cerevisiae 5,498 uncertain 32.7 1.003
Click to View Chart Preview Click for Info SEPT5 [ENSG00000184702] Homo sapiens 6,532 uncertain 0.016 3.203
Click to View Chart Preview Click for Info MART [ENSG00000108387] Homo sapiens 8,450 uncertain 1.179 0.147
Click to View Chart Preview Click for Info TEX14 [ENSG00000121101] Homo sapiens 8,451 uncertain 1.179 0.147
Click to View Chart Preview Click for Info RP11-291L22.2 [ENSG00000120555] Homo sapiens 9,385 uncertain 2.285 0.134
Click to View Chart Preview Click for Info LOC441601 [ENSG00000164740] Homo sapiens 12,069 uncertain 0.833 1.962

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of CDC11 (from probeset YJR076C).

Click to enlarge