Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 3,846



Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 1.202
P(reg)
= 0.2357
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info act2 [SPAC630.03] Schizosaccharomyces pombe 1,628 uncertain 6.94E-11 4.034
Click to View Chart Preview Click for Info ARP3 [ENSG00000115091] Homo sapiens 6,410 uncertain 0.02 2.336
Click to View Chart Preview Click for Info ACTR3B [ENSG00000133627] Homo sapiens 13,559 uncertain 4.048 1.592
Click to View Chart Preview Click for Info ARP3 [AT1G13180] Arabidopsis thaliana 16,899 uncertain 1.223 2.022

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of ARP3 (from probeset YJR065C).

Click to enlarge