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Saccharomyces cerevisiae

Cyclebase periodic rank: 378

Periodic


Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.152E-4
P(reg)
= 6.926E-10
Peaktime
= S (47%)

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info aps4 [AT5G43780] Arabidopsis thaliana 1,324 uncertain 0.017 0.686
Click to View Chart Preview Click for Info At3g22890 Arabidopsis thaliana 12,793 uncertain 1.412 0.529
Click to View Chart Preview Click for Info At1g19920 Arabidopsis thaliana 15,228 uncertain 0.898 1.895
Click to View Chart Preview Click for Info APS3 [AT4G14680] Arabidopsis thaliana 18,462 uncertain 1.437 2.549

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of MET3 (from probeset YJR010W).

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