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Saccharomyces cerevisiae

Cyclebase periodic rank: 698



Gene Features:

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Degradation Signals:
  1. PEST

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.451E-5
P(reg)
= 0.0019
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info AAP4 [AT5G63850] Arabidopsis thaliana 465 uncertain 6.5E-5 1.797
Click to View Chart Preview Click for Info AT1g08230 Arabidopsis thaliana 607 uncertain 0.033 0.044
Click to View Chart Preview Click for Info At5g41800 Arabidopsis thaliana 1,140 uncertain 0.029 0.289
Click to View Chart Preview Click for Info LAX2 [AT2G21050] Arabidopsis thaliana 1,371 uncertain 0.121 0.026
Click to View Chart Preview Click for Info AAP1 [AT1G58360] Arabidopsis thaliana 2,775 uncertain 0.461 0.009
Click to View Chart Preview Click for Info At2g36590 Arabidopsis thaliana 2,915 uncertain 0.036 1.416
Click to View Chart Preview Click for Info F9P7.1 [AT1G48640] Arabidopsis thaliana 3,396 uncertain 0.489 0.037
Click to View Chart Preview Click for Info AAP2 [AT5G09220] Arabidopsis thaliana 3,803 uncertain 0.61 0.031
Click to View Chart Preview Click for Info AATL1 [AT1G47670] Arabidopsis thaliana 4,482 uncertain 0.827 0.026
Click to View Chart Preview Click for Info AAP3 [AT1G77380] Arabidopsis thaliana 4,757 uncertain 0.204 0.458
Click to View Chart Preview Click for Info At2g39130 Arabidopsis thaliana 4,831 uncertain 0.072 1.655
Click to View Chart Preview Click for Info F11P17.1 [AT1G61270] Arabidopsis thaliana 5,361 uncertain 1.26 0.012
Click to View Chart Preview Click for Info ProT2 [AT3G55740] Arabidopsis thaliana 6,054 uncertain 0.96 0.077
Click to View Chart Preview Click for Info T12J5.50 [AT4G35180] Arabidopsis thaliana 7,343 uncertain 1.133 0.106
Click to View Chart Preview Click for Info F8M21_130 [AT5G15240] Arabidopsis thaliana 7,815 uncertain 1.672 0.056
Click to View Chart Preview Click for Info LAX3 [AT1G77690] Arabidopsis thaliana 8,471 uncertain 1.889 0.061
Click to View Chart Preview Click for Info At1g10010 Arabidopsis thaliana 8,578 uncertain 1.05 0.196
Click to View Chart Preview Click for Info AAP5 [AT1G44100] Arabidopsis thaliana 9,818 uncertain 2.811 0.048
Click to View Chart Preview Click for Info At5g40780 Arabidopsis thaliana 10,077 uncertain 2.672 0.068
Click to View Chart Preview Click for Info At2g41190 Arabidopsis thaliana 10,083 uncertain 2.892 0.054
Click to View Chart Preview Click for Info At1g67640 Arabidopsis thaliana 10,842 uncertain 0.381 1.413
Click to View Chart Preview Click for Info LAX1 [AT5G01240] Arabidopsis thaliana 12,372 uncertain 2.152 0.273
Click to View Chart Preview Click for Info F26A9.9 [AT1G71680] Arabidopsis thaliana 12,876 uncertain 1.276 0.614
Click to View Chart Preview Click for Info At5g23810 Arabidopsis thaliana 13,041 uncertain 2.003 0.368
Click to View Chart Preview Click for Info AATL2 [AT1G24400] Arabidopsis thaliana 14,200 uncertain 2.121 0.495
Click to View Chart Preview Click for Info T7H20_230 [AT5G02180] Arabidopsis thaliana 14,321 uncertain 0.777 1.736
Click to View Chart Preview Click for Info AAP6 [AT5G49630] Arabidopsis thaliana 15,563 uncertain 1.786 0.906
Click to View Chart Preview Click for Info AUX1 [AT2G38120] Arabidopsis thaliana 16,735 uncertain 1.904 1.128
Click to View Chart Preview Click for Info At5g02170 Arabidopsis thaliana 16,846 uncertain 2.146 1.012
Click to View Chart Preview Click for Info At1g25530 Arabidopsis thaliana 16,856 uncertain 2.248 0.961
Click to View Chart Preview Click for Info ProT1 [AT2G39890] Arabidopsis thaliana 16,908 uncertain 2.864 0.725
Click to View Chart Preview Click for Info AT3g28960 Arabidopsis thaliana 17,918 uncertain 2.895 0.952

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of AVT1 (from probeset YJR001W).

Click to enlarge