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Saccharomyces cerevisiae

Cyclebase periodic rank: 4,243



Gene Features:

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Degradation Signals:
  1. Dbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.3254
P(reg)
= 2.653
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info SPCC757.12 Schizosaccharomyces pombe 27 M 5.14E-48 9.56E-18
Periodic
Click to View Chart Preview Click for Info At4g25000 Arabidopsis thaliana 143 G1 0.004 0.007
Periodic
Click to View Chart Preview Click for Info SPCC11E10.09c Schizosaccharomyces pombe 353 G2/M 1.16E-10 1.31E-8
Periodic
Click to View Chart Preview Click for Info mal1 [SPBC1683.07] Schizosaccharomyces pombe 1,148 uncertain 9.83E-4 3.58E-4
Click to View Chart Preview Click for Info MAL12 [YGR292W] Saccharomyces cerevisiae 1,282 uncertain 3.72E-6 0.273
Click to View Chart Preview Click for Info aah3 [SPCC63.02c] Schizosaccharomyces pombe 1,373 uncertain 9.36E-9 0.193
Click to View Chart Preview Click for Info SPAC27E2.01 Schizosaccharomyces pombe 1,452 uncertain 9.78E-9 0.292
Click to View Chart Preview Click for Info meu7 [SPBC16A3.13] Schizosaccharomyces pombe 1,583 uncertain 0.488 1.69E-8
Click to View Chart Preview Click for Info 4F2 [ENSG00000168003] Homo sapiens 1,601 uncertain 0.024 0.008
Click to View Chart Preview Click for Info mde5 [SPAC4A8.01] Schizosaccharomyces pombe 2,409 uncertain 0.273 0.006
Click to View Chart Preview Click for Info YJL221C [YIL172C] Saccharomyces cerevisiae 3,185 uncertain 0.502 0.085
Click to View Chart Preview Click for Info YJL216C Saccharomyces cerevisiae 3,635 uncertain 0.15 1.064
Click to View Chart Preview Click for Info aah2 [SPAC23D3.14c] Schizosaccharomyces pombe 4,040 uncertain 762.701 2.52E-4
Click to View Chart Preview Click for Info MAL32 [YBR299W] Saccharomyces cerevisiae 4,238 uncertain 3.017 0.283
Click to View Chart Preview Click for Info FSP2 [YGR287C] Saccharomyces cerevisiae 4,911 uncertain 1.412 4.031
Click to View Chart Preview Click for Info YOL157C Saccharomyces cerevisiae 6,041 uncertain 239.4 2.703
Click to View Chart Preview Click for Info At1g76130 Arabidopsis thaliana 14,175 uncertain 0.923 1.352
Click to View Chart Preview Click for Info T17F3.14 [AT1G69830] Arabidopsis thaliana 19,499 uncertain 1.935 2.335

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of FSP2 (from probeset YJL221C).

Click to enlarge