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Saccharomyces cerevisiae

Cyclebase periodic rank: 590

Periodic


Gene Features:

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Degradation Signals:
  1. Dbox
  2. KENbox
  3. PEST
Phosphorylated By:
  1. Cdc28p

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 2.841E-6
P(reg)
= 8.977E-4
Peaktime
= G1 (20%)

Combined Peaktime

Peaktime Chart
* Y-axis rescaled to remove outlier(s)
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info FH2 [AT2G43800] Arabidopsis thaliana 388 M/G1 0.002 0.307
Periodic
Click to View Chart Preview Click for Info FCAALL.218 [AT4G15200] Arabidopsis thaliana 2,242 uncertain 0.356 0.006
Click to View Chart Preview Click for Info fus1 [SPAC20G4.02c] Schizosaccharomyces pombe 2,667 uncertain 1.01 0.003
Click to View Chart Preview Click for Info FH9 [AT5G48360] Arabidopsis thaliana 2,835 uncertain 0.706 8.21E-4
Click to View Chart Preview Click for Info cdc12 [SPAC1F5.04c] Schizosaccharomyces pombe 3,022 uncertain 0.034 1.663
Click to View Chart Preview Click for Info FHDC1 [ENSG00000137460] Homo sapiens 3,587 uncertain 0.008 0.618
Click to View Chart Preview Click for Info FH21A [AT5G07760] Arabidopsis thaliana 3,931 uncertain 0.042 2.147
Click to View Chart Preview Click for Info for3 [SPCC895.05] Schizosaccharomyces pombe 3,934 uncertain 52.504 0.154
Click to View Chart Preview Click for Info FMN1 [ENSG00000186031] Homo sapiens 5,338 uncertain 2.074 0.01
Click to View Chart Preview Click for Info BNI1 [YNL271C] Saccharomyces cerevisiae 5,497 uncertain 70.43 0.464
Click to View Chart Preview Click for Info FH11 [AT3G05470] Arabidopsis thaliana 6,489 uncertain 0.3 0.522
Click to View Chart Preview Click for Info FH12 [AT1G42980] Arabidopsis thaliana 6,538 uncertain 1.511 0.025
Click to View Chart Preview Click for Info FH5 [AT5G54650] Arabidopsis thaliana 7,108 uncertain 0.464 0.363
Click to View Chart Preview Click for Info DAAM1 [ENSG00000100592] Homo sapiens 8,529 uncertain 0.069 2.64
Click to View Chart Preview Click for Info FH8 [AT1G70140] Arabidopsis thaliana 8,997 uncertain 1.334 0.158
Click to View Chart Preview Click for Info FH15B [AT5G07650] Arabidopsis thaliana 9,159 uncertain 0.486 0.633
Click to View Chart Preview Click for Info FH4 [AT1G24150] Arabidopsis thaliana 10,275 uncertain 1.731 0.174
Click to View Chart Preview Click for Info FMN2 [ENSG00000155816] Homo sapiens 11,372 uncertain 3.793 0.279
Click to View Chart Preview Click for Info DAAM2 [ENSG00000146122] Homo sapiens 11,505 uncertain 4.367 0.262
Click to View Chart Preview Click for Info FH7 [AT1G59910] Arabidopsis thaliana 17,152 uncertain 2.065 1.155
Click to View Chart Preview Click for Info FH16 [AT5G07770] Arabidopsis thaliana 17,516 uncertain 2.062 1.285
Click to View Chart Preview Click for Info FH6 [AT5G67470] Arabidopsis thaliana 19,839 uncertain 2.09 2.378
Click to View Chart Preview Click for Info FH10 [AT3G07540] Arabidopsis thaliana 19,968 uncertain 3.003 1.589

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of BNR1 (from probeset YIL159W).

Click to enlarge