Cyclebase.org

Search Type:
  • Gene Name
  • BLAST
Example searches:

 

Saccharomyces cerevisiae

Cyclebase periodic rank: 5,672



Gene Features:

[hide] [show]
Degradation Signals:
  1. PEST

Analysis Results

[hide] [show]

Combined Analysis (all experiments)

P(per)
= 23.96
P(reg)
= 2.564
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
Loading Image
Error Loading Image!

Experiments


Orthologs and Paralogs:

[hide] [show]
Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info mip1 [SPAC57A7.11] Schizosaccharomyces pombe 4,283 uncertain 392.134 0.2
Click to View Chart Preview Click for Info T20L15_40 [AT5G01770] Arabidopsis thaliana 10,446 uncertain 0.22 2.434
Click to View Chart Preview Click for Info RAPTOR [ENSG00000141564] Homo sapiens 10,837 uncertain 0.579 1.278
Click to View Chart Preview Click for Info T16O11.22 [AT3G08850] Arabidopsis thaliana 16,661 uncertain 0.975 2.482

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of KOG1 (from probeset YHR186C).

Click to enlarge