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Saccharomyces cerevisiae

Cyclebase periodic rank: 768



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 4.615E-8
P(reg)
= 0.0292
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info ctr4 [SPCC1393.10] Schizosaccharomyces pombe 486 G2 2.06E-6 4.6E-10
Periodic
Click to View Chart Preview Click for Info COPT3 [AT5G59040] Arabidopsis thaliana 869 uncertain 0.09 0.004
Click to View Chart Preview Click for Info ctr5 [SPAC1142.05] Schizosaccharomyces pombe 2,123 uncertain 1.042 2.78E-6
Click to View Chart Preview Click for Info ctr6 [SPBC23G7.16] Schizosaccharomyces pombe 4,456 uncertain 728.264 1.058
Click to View Chart Preview Click for Info SLC31A2 [ENSG00000136867] Homo sapiens 4,876 uncertain 0.094 0.163
Click to View Chart Preview Click for Info COPT5 [AT5G20650] Arabidopsis thaliana 5,436 uncertain 0.087 1.676
Click to View Chart Preview Click for Info CTR3 [YLR411W] Saccharomyces cerevisiae 5,904 uncertain 54.07 3.729
Click to View Chart Preview Click for Info At2g37920 Arabidopsis thaliana 8,389 uncertain 0.777 0.279
Click to View Chart Preview Click for Info COPT2 [AT3G46900] Arabidopsis thaliana 12,103 uncertain 0.656 1.092
Click to View Chart Preview Click for Info COPT1 [AT5G59030] Arabidopsis thaliana 17,764 uncertain 1.498 2.019

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of CTR2 (from probeset YHR175W).

Click to enlarge