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Saccharomyces cerevisiae

Cyclebase periodic rank: 894



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 1.749E-6
P(reg)
= 0.0307
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info urg2 [SPAC1002.17c] Schizosaccharomyces pombe 136 uncertain 1.33E-17 1.24E-15
Periodic
Click to View Chart Preview Click for Info SPAC1399.04c Schizosaccharomyces pombe 507 uncertain 6.1E-11 3.88E-5
Click to View Chart Preview Click for Info At1g55810 Arabidopsis thaliana 983 uncertain 0.042 0.129
Click to View Chart Preview Click for Info urk1 [SPCC162.11c] Schizosaccharomyces pombe 1,492 uncertain 1.33E-7 0.15
Click to View Chart Preview Click for Info DAS2 [YDR020C] Saccharomyces cerevisiae 1,666 uncertain 0.001 0.132
Click to View Chart Preview Click for Info At3g27190 Arabidopsis thaliana 1,740 uncertain 0.008 2.115
Click to View Chart Preview Click for Info URK1 [YNR012W] Saccharomyces cerevisiae 2,557 uncertain 0.015 0.35
Click to View Chart Preview Click for Info SPAC1B3.01c Schizosaccharomyces pombe 3,951 uncertain 16.814 5.626
Click to View Chart Preview Click for Info F5K20_200 [AT3G53900] Arabidopsis thaliana 5,129 uncertain 0.124 0.98
Click to View Chart Preview Click for Info At1g32060 Arabidopsis thaliana 5,279 uncertain 0.616 0.123
Click to View Chart Preview Click for Info At2g01460 Arabidopsis thaliana 5,514 uncertain 0.139 0.971
Click to View Chart Preview Click for Info At3g27440 Arabidopsis thaliana 6,000 uncertain 1.307 0.025
Click to View Chart Preview Click for Info CTNNB [ENSG00000168036] Homo sapiens 6,250 uncertain 0.011 3.931
Click to View Chart Preview Click for Info uprt1 [AT5G40870] Arabidopsis thaliana 8,674 uncertain 0.167 1.992
Click to View Chart Preview Click for Info JUP [ENSG00000173801] Homo sapiens 13,692 uncertain 1.319 5.893
Click to View Chart Preview Click for Info At1g26190 Arabidopsis thaliana 14,067 uncertain 0.545 2.471
Click to View Chart Preview Click for Info UCK2 [ENSG00000143179] Homo sapiens 14,114 uncertain 5.825 7.532
Click to View Chart Preview Click for Info At1g73980 Arabidopsis thaliana 14,431 uncertain 1.316 0.946
Click to View Chart Preview Click for Info UPT1 [AT4G26510] Arabidopsis thaliana 17,487 uncertain 1.384 2.062

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of FUR1 (from probeset YHR128W).

Click to enlarge