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Saccharomyces cerevisiae

Cyclebase periodic rank: 3,263



Analysis Results

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Combined Analysis (all experiments)

P(per)
= 0.0798
P(reg)
= 0.6873
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info MPA43 [YNL249C] Saccharomyces cerevisiae 2,260 uncertain 0.001 1.228
Click to View Chart Preview Click for Info YDR109C Saccharomyces cerevisiae 5,774 uncertain 70.01 1.4
Click to View Chart Preview Click for Info GK [ENSG00000198814] Homo sapiens 7,020 uncertain 0.039 1.788
Click to View Chart Preview Click for Info GLR1 [AT1G80460] Arabidopsis thaliana 8,675 uncertain 0.805 0.29
Click to View Chart Preview Click for Info GK2 [ENSG00000196475] Homo sapiens 12,347 uncertain 3.564 0.567
Click to View Chart Preview Click for Info FLJ10986 [ENSG00000172456] Homo sapiens 12,558 uncertain 0.534 4.439
Click to View Chart Preview Click for Info At4g30310 Arabidopsis thaliana 14,494 uncertain 0.892 1.537

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

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Graph of GUT1 (from probeset YHL032C).

Click to enlarge