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Saccharomyces cerevisiae

Cyclebase periodic rank: 1,717



Gene Features:

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Degradation Signals:
  1. KENbox

Analysis Results

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Combined Analysis (all experiments)

P(per)
= 5.23E-7
P(reg)
= 2.99
Peaktime
uncertain [see possible reasons why]

Combined Peaktime

Peaktime Chart
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Experiments


Orthologs and Paralogs:

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Gene Name Organism Rank Sort Direction Rank Peaktime P(per) P(reg)
Click to View Chart Preview Click for Info gcn5 [SPAC1952.05] Schizosaccharomyces pombe 2,254 uncertain 5.72E-7 3.037
Click to View Chart Preview Click for Info SPBC21D10.10 Schizosaccharomyces pombe 2,440 uncertain 0.189 0.027
Click to View Chart Preview Click for Info SPBC25H2.11c Schizosaccharomyces pombe 4,752 uncertain 13731.489 0.844
Click to View Chart Preview Click for Info CECR2 [ENSG00000099954] Homo sapiens 4,909 uncertain 1.294 0.012
Click to View Chart Preview Click for Info SPT7 [YBR081C] Saccharomyces cerevisiae 4,970 uncertain 2.689 2.458
Click to View Chart Preview Click for Info At3g27800 Arabidopsis thaliana 8,396 uncertain 2.997 0.006
Click to View Chart Preview Click for Info HAG1 [AT3G54610] Arabidopsis thaliana 11,442 uncertain 0.378 1.724

Short Method Description

Rank Information

The rank orders each gene of an organism by a score we have assigned based on its pattern of expression and magnitude of regulation. Those genes with the highest periodicity and that are most regulated are given the best ranks (lowest number).

P(per) Information

The P-value for periodicity is the chance of observing as great a periodicity by random shuffling of the individual time-point values of the expression profile. A small P(per) value therefore implies a highly periodic pattern of expression.

P(reg) Information

The P-value for regulation estimates the chance that the magnitude of regulation will have occurred at random. A small P(reg) value therefore implies a strongly regulated gene.

Peaktime Information

The peaktime describes when in the cell cycle a gene is maximally expressed. Peaktime is calculated as a percent, with both 0 and 100 representing the M/G1 transition in the cell cycle. These percents are displayed as discrete phases or transitions of the cell cycle.

Predicted Periodic

This gene is predicted periodic based on its rank.

Several reasons exist for why peaktime could be uncertain.

Several reasons exist for why peaktime could be uncertain.

Click for more information

Graph of GCN5 (from probeset YGR252W).

Click to enlarge